Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72006 | Canola | nucleus | 98.93 | 99.2 |
| Bra007346.1-P | Field mustard | nucleus | 80.21 | 97.72 |
| CDX67704 | Canola | nucleus | 60.43 | 91.87 |
| CDY57608 | Canola | nucleus | 58.56 | 91.25 |
| AT3G57670.1 | Thale cress | nucleus | 91.98 | 89.82 |
| CDX88959 | Canola | nucleus | 85.56 | 87.91 |
| VIT_08s0007g08070.t01 | Wine grape | nucleus | 63.37 | 68.7 |
| PGSC0003DMT400077822 | Potato | nucleus | 56.42 | 66.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.28 | 62.08 |
| CDY35565 | Canola | nucleus | 53.21 | 58.7 |
| CDY06390 | Canola | nucleus | 52.41 | 58.68 |
| CDY29624 | Canola | nucleus | 53.21 | 58.53 |
| CDY22834 | Canola | nucleus, plastid | 52.67 | 58.28 |
| CDY25224 | Canola | nucleus | 52.41 | 57.99 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 56.42 | 57.34 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 56.42 | 57.03 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 55.88 | 56.49 |
| CDY57920 | Canola | nucleus | 52.94 | 55.15 |
| CDY27556 | Canola | nucleus | 52.41 | 54.75 |
| EER88644 | Sorghum | nucleus, plastid | 58.56 | 54.21 |
| Zm00001d036812_P001 | Maize | nucleus | 55.88 | 53.73 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 51.07 | 52.91 |
| Zm00001d046774_P001 | Maize | nucleus | 55.88 | 52.51 |
| CDY19385 | Canola | nucleus | 42.51 | 52.3 |
| CDX97995 | Canola | nucleus | 43.05 | 52.27 |
| CDY12025 | Canola | nucleus | 39.3 | 51.22 |
| CDY03134 | Canola | nucleus | 38.24 | 49.83 |
| Solyc03g059270.2.1 | Tomato | nucleus | 44.12 | 48.25 |
| CDY26642 | Canola | nucleus | 37.97 | 47.97 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 56.42 | 47.42 |
| CDX93575 | Canola | nucleus | 41.71 | 46.29 |
| CDX95075 | Canola | nucleus | 41.71 | 46.15 |
| CDY22690 | Canola | nucleus | 38.24 | 42.43 |
| CDY06308 | Canola | nucleus | 37.7 | 41.84 |
| CDY09179 | Canola | nucleus | 18.98 | 21.91 |
| CDY09178 | Canola | nucleus | 20.05 | 20.33 |
| CDY26965 | Canola | nucleus | 19.79 | 20.22 |
| CDY26966 | Canola | nucleus | 20.32 | 20.21 |
| CDX98183 | Canola | nucleus | 20.05 | 19.95 |
| CDY31715 | Canola | nucleus | 20.05 | 19.95 |
| CDX74505 | Canola | nucleus | 20.05 | 19.95 |
| CDY69109 | Canola | nucleus | 19.79 | 19.89 |
| CDY12041 | Canola | nucleus | 20.86 | 19.07 |
| CDY03148 | Canola | nucleus | 20.59 | 17.87 |
| CDY46467 | Canola | nucleus | 20.86 | 15.98 |
| CDX91774 | Canola | nucleus | 20.86 | 15.73 |
Protein Annotations
| EnsemblPlants:CDY06083 | EnsemblPlantsGene:GSBRNA2T00121951001 | Gene3D:3.30.160.60 | GO:A0A078F2V1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| PFscan:PS50157 | ProteinID:CDY06083 | ProteinID:CDY06083.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE8C6C | MapMan:15.5.15 | : | : | : |
Description
BnaA09g36970D
Coordinates
chrLK031967:-:654939..657168
Molecular Weight (calculated)
42149.1 Da
IEP (calculated)
6.970
GRAVY (calculated)
-0.935
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPYSNFFT GWFKSNPFHH YPNSSTSPSP PPPHSSFFFP HSGDLHRPPP APTPPPSPPL REALPLLSLS PANKQQHHHD HQIQEPPSIS MDVDYDHHHH
101: QDDHNLDDHD HDVTVALHIG LPSPSPQDMA SLLMMSSSSS SSRPTTHYLE DMNGKKDLDN DYHQGGVGGG EDDDEDSVGG DGGCRISRLN KGQYWIPTPS
201: QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTGM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK
301: VFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHGAYGID GFDEEDEPAS EVEQLDNDHE SISK
101: QDDHNLDDHD HDVTVALHIG LPSPSPQDMA SLLMMSSSSS SSRPTTHYLE DMNGKKDLDN DYHQGGVGGG EDDDEDSVGG DGGCRISRLN KGQYWIPTPS
201: QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTGM LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK
301: VFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHGAYGID GFDEEDEPAS EVEQLDNDHE SISK
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.