Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0026g00940.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G57670.1 | VIT_01s0026g00940.t01 | AT1G10470.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57608 | Canola | nucleus | 52.75 | 75.83 |
| Bra003295.1-P | Field mustard | nucleus | 53.04 | 74.39 |
| CDX67704 | Canola | nucleus | 53.04 | 74.39 |
| KRG95308 | Soybean | nucleus, plastid | 72.17 | 71.35 |
| KRH66988 | Soybean | nucleus | 71.59 | 68.99 |
| PGSC0003DMT400077822 | Potato | nucleus | 62.32 | 67.61 |
| VIT_06s0004g01870.t01 | Wine grape | nucleus | 65.22 | 67.37 |
| Bra007346.1-P | Field mustard | nucleus | 58.84 | 66.12 |
| CDX72006 | Canola | nucleus | 68.99 | 63.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.29 | 63.61 |
| AT3G57670.1 | Thale cress | nucleus | 70.43 | 63.45 |
| CDY06083 | Canola | nucleus | 68.7 | 63.37 |
| CDX88959 | Canola | nucleus | 66.38 | 62.91 |
| Bra014612.1-P | Field mustard | nucleus, plastid | 66.09 | 62.64 |
| VIT_13s0064g01060.t01 | Wine grape | nucleus | 62.03 | 62.39 |
| GSMUA_Achr1P16530_001 | Banana | nucleus | 59.71 | 57.06 |
| VIT_01s0011g03100.t01 | Wine grape | nucleus | 44.35 | 55.64 |
| TraesCS7A01G404400.1 | Wheat | nucleus | 58.55 | 54.89 |
| TraesCS7B01G304000.1 | Wheat | nucleus | 58.55 | 54.59 |
| VIT_18s0001g05860.t01 | Wine grape | nucleus | 42.9 | 54.21 |
| TraesCS7D01G397800.1 | Wheat | nucleus | 57.97 | 54.05 |
| Zm00001d046774_P001 | Maize | nucleus | 60.29 | 52.26 |
| Zm00001d036812_P001 | Maize | nucleus | 58.84 | 52.19 |
| EER88644 | Sorghum | nucleus, plastid | 60.0 | 51.24 |
| Solyc03g059270.2.1 | Tomato | nucleus | 48.12 | 48.54 |
| Os06t0612300-01 | Rice | endoplasmic reticulum, vacuole | 61.45 | 47.64 |
| VIT_06s0080g00270.t01 | Wine grape | plastid | 47.25 | 46.97 |
| VIT_06s0061g00780.t01 | Wine grape | nucleus | 19.42 | 17.18 |
| VIT_18s0072g00840.t01 | Wine grape | nucleus | 25.22 | 16.51 |
| VIT_07s0141g00020.t01 | Wine grape | vacuole | 18.84 | 15.48 |
Protein Annotations
| EntrezGene:100255592 | wikigene:100255592 | MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:CCB55154 | ProteinID:CCB55154.1 |
| UniProt:F6HL47 | EMBL:FN595991 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR013087 |
| EntrezGene:LOC100255592 | wikigene:LOC100255592 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF98 |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI00015CAAD4 | ArrayExpress:VIT_08s0007g08070 | EnsemblPlantsGene:VIT_08s0007g08070 | EnsemblPlants:VIT_08s0007g08070.t01 |
| RefSeq:XP_002277537 | RefSeq:XP_002277537.1 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
No Description!
Coordinates
chr8:-:21424364..21426648
Molecular Weight (calculated)
38769.3 Da
IEP (calculated)
7.359
GRAVY (calculated)
-0.823
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDPYSKFFA GWFKFNPLHH FPSAEPPSQP PYGHSLYTNS FSSHSNSIIY QTPPPSPPLR EALPLLSLSP TRHEEDQQQQ HSSCSSAMDV DRKKKAKEES
101: FFSSSTNTNT ATDDGDDDET VTVALHIGLP SPSAAEMASM LSSSSEITDK DGDGDVSGYP INRLNKGQYW IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ
201: MHMWGHGSQY RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCICGS
301: DFKHKRSLKD HIKAFGNGHA AYGIDGFEEE DEPASEVEQD DESMQ
101: FFSSSTNTNT ATDDGDDDET VTVALHIGLP SPSAAEMASM LSSSSEITDK DGDGDVSGYP INRLNKGQYW IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ
201: MHMWGHGSQY RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCICGS
301: DFKHKRSLKD HIKAFGNGHA AYGIDGFEEE DEPASEVEQD DESMQ
001: MTDPYSNFFT DWFKSNPFHH YPNSSTNPSP HPLPPVTPPS SFFFFPQSGD LRRPPPPPTP PPSPPLREAL PLLSLSPANK QQDHHHNHDH LIQEPPSTSM
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
101: DVDYDHHHQD DHHNLDDDDH DVTVALHIGL PSPSAQEMAS LLMMSSSSSS SRTTHHHEDM NHKKDLDHEY SHGAVGGGED DDEDSVGGDG GCRISRLNKG
201: QYWIPTPSQI LIGPTQFSCP VCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTGMLR LPCYCCAPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGIKP
301: FMCRKCGKAF AVRGDWRTHE KNCGKLWYCI CGSDFKHKRS LKDHIKAFGN GHGAYGIDGF DEEDEPASEV EQLDNDHESM QSK
Arabidopsis Description
WIP2WIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VLW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.