Factsheet for VIT_01s0026g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02210.t01
VIT_05s0077g00940.t01
VIT_07s0104g00880.t01
VIT_08s0007g08070.t01
VIT_15s0046g03180.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10470.1	VIT_05s0077g00940.t01	AT2G18790.1	11691995
AT1G10470.1	VIT_15s0046g03180.t01	AT2G45820.1	9771897
AT1G10470.1	VIT_05s0020g02210.t01	AT3G21510.1	10930573
AT1G10470.1	VIT_05s0020g02210.t01	AT3G21510.1	16965536
AT1G10470.1	VIT_07s0104g00880.t01	AT3G29350.1	16965536
AT1G10470.1	VIT_08s0007g08070.t01	AT3G57670.1	18642946
AT1G10470.1	VIT_15s0046g03180.t01	AT3G61260.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99225	Soybean	nucleus	67.42	67.12
KRH45761	Soybean	nucleus	66.06	65.47
KRH69443	Soybean	nucleus	66.52	61.25
KRH74701	Soybean	nucleus	67.42	61.07
VIT_13s0067g03480.t01	Wine grape	cytosol	33.94	60.98
VIT_13s0067g03450.t01	Wine grape	cytosol	38.46	60.71
VIT_13s0067g03490.t01	Wine grape	nucleus	39.37	59.59
PGSC0003DMT400058306	Potato	nucleus	64.71	57.66
Solyc05g006420.2.1	Tomato	nucleus	65.16	57.37
Bra027829.1-P	Field mustard	nucleus	57.92	56.64
CDY45155	Canola	nucleus	57.47	55.7
VIT_13s0067g03070.t01	Wine grape	cytosol	38.01	54.9
CDY30913	Canola	nucleus	57.92	53.78
VIT_17s0000g07580.t01	Wine grape	cytosol, nucleus, plastid	59.28	50.78
CDY37975	Canola	nucleus	57.47	50.2
CDY20948	Canola	nucleus	57.01	49.8
Bra018439.1-P	Field mustard	nucleus	56.56	49.8
CDY20630	Canola	nucleus	55.66	49.8
CDY66046	Canola	nucleus	56.56	49.41
CDX93424	Canola	nucleus	56.56	49.41
Bra019932.1-P	Field mustard	nucleus	56.56	49.41
VIT_13s0067g03460.t01	Wine grape	nucleus	36.2	49.08
CDY07801	Canola	nucleus	58.82	49.06
AT1G10470.1	Thale cress	nucleus	57.47	49.03
CDY34890	Canola	nucleus	57.47	48.85
Bra036963.1-P	Field mustard	nucleus	57.47	48.66
Bra031714.1-P	Field mustard	nucleus	57.47	48.66
VIT_13s0067g03510.t01	Wine grape	nucleus	42.08	47.21
VIT_08s0007g05390.t01	Wine grape	nucleus	42.99	43.58
VIT_13s0067g03430.t01	Wine grape	nucleus	42.53	42.73
AT1G59940.2	Thale cress	golgi	54.75	37.46
VIT_18s0001g02540.t01	Wine grape	nucleus	37.56	35.78

Protein Annotations

EntrezGene:100263979	MapMan:11.4.2.5	Gene3D:3.40.50.2300	ProteinID:ACO88941	ProteinID:ACO88941.1	EMBL:AM431252
ProteinID:CAN69259	ProteinID:CAN69259.1	ProteinID:CBI32076	ProteinID:CBI32076.3	InterPro:CheY-like_superfamily	UniProt:D7TNK3
EMBL:FJ822980	EMBL:FN596002	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	PFAM:PF00072
PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF17	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
UniParc:UPI00015CAF4F	ArrayExpress:VIT_01s0026g00940	EnsemblPlantsGene:VIT_01s0026g00940	EnsemblPlants:VIT_01s0026g00940.t01	RefSeq:XP_010652890.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:9872312..9873544

Molecular Weight (calculated)

24231.7 Da

IEP (calculated)

4.922

GRAVY (calculated)

-0.447

Length

221 amino acids

Sequence
(BLAST)

001: MEISGVLSRR NMPDEIGGFD LSPGHSEEEA HVLAVDDSLV DRKVIERLLK ISSCKVTAVD SGRRALQFLG LDEEKNSAGL DGLKVDLIIT DYCMPGMTGY
101: ELLKKIKESS TFRETPVVIM SSENILTRID RCLEEGAEDF IVKPVKLSDV KRLKDYMTRE DRDGNEGRGI NKRKLGEACD VSPSLSSSPP SISSSSSSWS
201: APSSPTSLDS PTRRLKTSTC D

Best Arabidopsis Sequence Match ( AT1G59940.2 )
(BLAST)

001: MNFEFIFLYL FRLVRYFLLP PSQKRKKGTY RFVSLIVTWN KKIFCKRNEV ENDPPIKRFD IEEYNNENIK QSREELVAIS LFYLFISYSF LTMAKDGGVS
101: CLRRSEMIGI GIGELESPPL DSDQVHVLAV DDSLVDRIVI ERLLRITSCK VTAVDSGWRA LEFLGLDDDK AAVEFDRLKV DLIITDYCMP GMTGYELLKK
201: IKESTSFKEV PVVIMSSENV MTRIDRCLEE GAEDFLLKPV KLADVKRLRS YLTRDVKVAA EGNKRKLTTP PPPPPLSATS SMESSDSTVE SPLSMVDDED
301: SLTMSPESAT SLVDSPMRSP GLA

Arabidopsis Description

ARR3response regulator 3 [Source:TAIR;Acc:AT1G59940]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.