Factsheet for Bra036963.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra003295.1-P
Bra004940.1-P
Bra007346.1-P
Bra007589.1-P
Bra022192.1-P
Bra023876.1-P
Bra025394.1-P
Bra036215.1-P
Bra039311.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10470.1	Bra001650.1-P	AT2G18790.1	11691995
AT1G10470.1	Bra022192.1-P	AT2G18790.1	11691995
AT1G10470.1	Bra004940.1-P	AT2G45820.1	9771897
AT1G10470.1	Bra039311.1-P	AT2G45820.1	9771897
AT1G10470.1	Bra023876.1-P	AT3G21510.1	10930573
AT1G10470.1	Bra023876.1-P	AT3G21510.1	16965536
AT1G10470.1	Bra025394.1-P	AT3G29350.1	16965536
AT1G10470.1	Bra036215.1-P	AT3G29350.1	16965536
AT1G10470.1	Bra003295.1-P	AT3G57670.1	18642946
AT1G10470.1	Bra007346.1-P	AT3G57670.1	18642946
AT1G10470.1	Bra007589.1-P	AT3G61260.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031714.1-P	Field mustard	nucleus	100.0	100.0
CDY34890	Canola	nucleus	97.32	97.69
CDY07801	Canola	nucleus	97.7	96.23
AT1G10470.1	Thale cress	nucleus	86.97	87.64
Bra018439.1-P	Field mustard	nucleus	83.91	87.25
Bra019932.1-P	Field mustard	nucleus	83.52	86.17
Bra027829.1-P	Field mustard	nucleus	65.13	75.22
PGSC0003DMT400058306	Potato	nucleus	57.47	60.48
Solyc05g006420.2.1	Tomato	nucleus	57.09	59.36
Bra018084.1-P	Field mustard	cytosol, nucleus, plastid	40.61	59.22
Bra033773.1-P	Field mustard	nucleus	40.23	58.33
VIT_01s0026g00940.t01	Wine grape	nucleus	48.66	57.47
KRH45761	Soybean	nucleus	48.28	56.5
KRG99225	Soybean	nucleus	47.13	55.41
Bra010132.1-P	Field mustard	nucleus	40.23	55.26
KRH69443	Soybean	nucleus	50.19	54.58
KRH74701	Soybean	nucleus	50.57	54.1
Bra015885.1-P	Field mustard	cytosol, golgi, peroxisome	37.55	52.97
Bra014695.1-P	Field mustard	cytosol	25.67	52.76
Bra016526.1-P	Field mustard	cytosol	41.76	52.66
Bra003782.1-P	Field mustard	cytosol	39.46	52.28
Bra000199.1-P	Field mustard	cytosol	31.8	51.55
Bra019524.1-P	Field mustard	cytosol	25.67	50.0
Bra025708.1-P	Field mustard	nucleus	40.61	49.77
Bra007242.1-P	Field mustard	cytosol, nucleus, plastid	29.89	46.15
Bra004615.1-P	Field mustard	nucleus	37.16	45.33
Bra000224.1-P	Field mustard	nucleus	36.02	43.52
Bra016943.1-P	Field mustard	cytosol	36.4	42.79
Bra007295.1-P	Field mustard	cytosol	36.4	40.25
Bra003265.1-P	Field mustard	cytosol	35.63	38.75
Bra014649.1-P	Field mustard	nucleus	34.48	38.46

Protein Annotations

MapMan:11.4.2.5	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra036963	EnsemblPlants:Bra036963.1	EnsemblPlants:Bra036963.1-P	InterPro:CheY-like_superfamily
ncoils:Coil	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	UniProt:M4F7A3	PFAM:PF00072
PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF17	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver
UniParc:UPI000253E6A3	SEG:seg	:	:	:	:

Description

AT1G10470 (E=2e-090) ARR4, MEE7, ATRR1, IBC7 | ARR4 (RESPONSE REGULATOR 4); protein binding / transcription regulator/ two-component response regulator

Coordinates

chrScaffold000123:-:487890..489100

Molecular Weight (calculated)

28527.0 Da

IEP (calculated)

4.375

GRAVY (calculated)

-0.289

Length

261 amino acids

Sequence
(BLAST)

001: MARDGGVSCL RSSEMMRVGI GGMESPPLDL DEVHVLAVDD SLVDRIVIER LLRITSCKVT AVDSGWRALE FLGLDNEKAS AELDRLKVDL IITDYCMPGM
101: TGYELLKKIK ESSSFRQVPV VIMSSENVLT RIDRCLEEGA EDFLLKPVKL ADVKRLRSYL TGDVKLSNAN KRKLPEDSVP VNTSFPPPPS PFPISPDSSD
201: SSLPLTISPE SSDSSPPLSP LEISSSPLSS PIDDEDDDVL TSSPAPEESP ARRQKMRSPL D

Best Arabidopsis Sequence Match ( AT1G10470.1 )
(BLAST)

001: MARDGGVSCL RRSEMMSVGG IGGIESAPLD LDEVHVLAVD DSLVDRIVIE RLLRITSCKV TAVDSGWRAL EFLGLDNEKA SAEFDRLKVD LIITDYCMPG
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD

Arabidopsis Description

ARR4Two-component response regulator ARR4 [Source:UniProtKB/Swiss-Prot;Acc:O82798]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.