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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000436.1-P nucleus
Bra001650.1-P
Bra002468.1-P
Bra003798.1-P cytosol
Bra004489.1-P nucleus
Bra004691.1-P cytosol
Bra004898.1-P
Bra005541.1-P
Bra008698.1-P
Bra013286.1-P
Bra013458.1-P
Bra014002.1-P
Bra015313.1-P
Bra016300.1-P nucleus
Bra016879.1-P cytosol
Bra017406.1-P
Bra017567.1-P
Bra018439.1-P
Bra019932.1-P
Bra020926.1-P
Bra022192.1-P
Bra023518.1-P
Bra024353.1-P
Bra024800.1-P
Bra025028.1-P
Bra026572.1-P
Bra030568.1-P
Bra031714.1-P
Bra031881.1-P
Bra032750.1-P
Bra034295.1-P cytosol
Bra036963.1-P
Bra037495.1-P cytosol, nucleus
Bra038805.1-P
Bra039485.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 Bra015313.1-P AT1G04400.1 11089975
AT2G18790.1 Bra030568.1-P AT1G04400.1 11089975
AT2G18790.1 Bra018439.1-P AT1G10470.1 11691995
AT2G18790.1 Bra019932.1-P AT1G10470.1 11691995
AT2G18790.1 Bra031714.1-P AT1G10470.1 11691995
AT2G18790.1 Bra036963.1-P AT1G10470.1 11691995
AT2G18790.1 Bra016300.1-P AT1G26960.1 23964902
AT2G18790.1 Bra016300.1-P AT1G26960.1 23964902
AT2G18790.1 Bra003798.1-P AT1G74490.1 23964902
AT2G18790.1 Bra003798.1-P AT1G74490.1 23964902
AT2G18790.1 Bra017406.1-P AT2G02950.1 10348744
AT2G18790.1 Bra024800.1-P AT2G02950.1 10348744
AT2G18790.1 Bra026572.1-P AT2G02950.1 10348744
AT2G18790.1 Bra001650.1-P AT2G18790.1 15273290
AT2G18790.1 Bra022192.1-P AT2G18790.1 15273290
AT2G18790.1 Bra001650.1-P AT2G18790.1 19286967
AT2G18790.1 Bra022192.1-P AT2G18790.1 19286967
AT2G18790.1 Bra034295.1-P AT2G26190.1 23964902
AT2G18790.1 Bra034295.1-P AT2G26190.1 23964902
AT2G18790.1 Bra005541.1-P AT2G32950.1 11752373
AT2G18790.1 Bra004691.1-P AT2G42400.1 22904146
AT2G18790.1 Bra016879.1-P AT2G42400.1 22904146
AT2G18790.1 Bra004691.1-P AT2G42400.1 22904146
AT2G18790.1 Bra016879.1-P AT2G42400.1 22904146
AT2G18790.1 Bra004898.1-P AT2G45290.1 23964902
AT2G18790.1 Bra000436.1-P AT2G46970.1 23964902
AT2G18790.1 Bra004489.1-P AT2G46970.1 23964902
AT2G18790.1 Bra000436.1-P AT2G46970.1 23964902
AT2G18790.1 Bra004489.1-P AT2G46970.1 23964902
AT2G18790.1 Bra014002.1-P AT4G13940.1 23964902
AT2G18790.1 Bra032750.1-P AT4G13940.1 23964902
AT2G18790.1 Bra013286.1-P AT4G18130.1 15273290
AT2G18790.1 Bra013286.1-P AT4G18130.1 19286967
AT2G18790.1 Bra013458.1-P AT4G20360.1 23964902
AT2G18790.1 Bra020926.1-P AT4G20360.1 23964902
AT2G18790.1 Bra038805.1-P AT4G20360.1 23964902
AT2G18790.1 Bra008698.1-P AT5G15450.1 23964902
AT2G18790.1 Bra023518.1-P AT5G15450.1 23964902
AT2G18790.1 Bra039485.1-P AT5G35840.1 15273290
AT2G18790.1 Bra039485.1-P AT5G35840.1 19286967
AT2G18790.1 Bra017567.1-P AT5G46240.1 23964902
AT2G18790.1 Bra025028.1-P AT5G46240.1 23964902
AT2G18790.1 Bra037495.1-P AT5G48300.1 23964902
AT2G18790.1 Bra037495.1-P AT5G48300.1 23964902
AT2G18790.1 Bra037495.1-P AT5G48300.1 23964902
AT2G18790.1 Bra002468.1-P AT5G60600.1 23964902
AT2G18790.1 Bra024353.1-P AT5G65090.1 23964902
AT2G18790.1 Bra031881.1-P AT5G65090.1 23964902
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX92112 Canola cytosol 93.96 98.77
AT2G18790.1 Thale cress nucleus 88.93 90.44
Bra001650.1-P Field mustard cytosol 11.24 87.58
VIT_05s0077g00940.t01 Wine grape cytosol 75.08 79.27
PGSC0003DMT400061712 Potato cytosol, plastid 73.83 77.88
Solyc01g059870.2.1 Tomato cytosol 72.65 76.57
KRH36969 Soybean nucleus 72.23 75.73
KRH11936 Soybean nucleus 72.15 74.85
Os03t0309200-01 Rice nucleus, plasma membrane 69.55 74.02
Zm00001d028905_P001 Maize extracellular 70.05 71.92
PGSC0003DMT400069974 Potato mitochondrion 67.45 71.47
Solyc05g053410.2.1 Tomato nucleus, plastid 67.11 71.36
TraesCS4D01G183400.1 Wheat plastid 69.55 71.22
EER94971 Sorghum plastid 70.3 71.14
TraesCS4B01G182400.1 Wheat plastid 69.46 71.01
TraesCS4A01G122500.2 Wheat plastid 69.46 71.01
HORVU4Hr1G053400.1 Barley plasma membrane 69.46 70.89
Zm00001d047632_P001 Maize plastid 68.88 70.41
GSMUA_Achr3P08340_001 Banana nucleus 63.26 69.24
Zm00001d025231_P001 Maize cytosol 7.8 58.12
Bra013286.1-P Field mustard cytosol 52.35 56.01
Zm00001d000219_P001 Maize cytosol 5.2 55.86
Bra031672.1-P Field mustard cytosol, plastid 48.57 51.65
Bra039485.1-P Field mustard cytosol, plastid 47.4 50.58
Bra020013.1-P Field mustard cytosol 48.41 47.69
Zm00001d024238_P001 Maize cytosol 12.16 32.95
Protein Annotations
MapMan:26.1.1.1Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40Gene3D:3.30.565.10ProteinID:AAO22531
ProteinID:AAO22531.1ProteinID:AIK23233.1EMBL:AY176687EnsemblPlantsGene:Bra022192EnsemblPlants:Bra022192.1EnsemblPlants:Bra022192.1-P
InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000003GO:GO:0000155GO:GO:0000160GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003682GO:GO:0003824GO:GO:0004871GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654
GO:GO:0005737GO:GO:0005829GO:GO:0006139GO:GO:0006325GO:GO:0006355GO:GO:0006464
GO:GO:0006629GO:GO:0006810GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009266GO:GO:0009409GO:GO:0009584
GO:GO:0009585GO:GO:0009605GO:GO:0009606GO:GO:0009628GO:GO:0009630GO:GO:0009638
GO:GO:0009640GO:GO:0009649GO:GO:0009687GO:GO:0009719GO:GO:0009791GO:GO:0009867
GO:GO:0009881GO:GO:0009883GO:GO:0009987GO:GO:0010018GO:GO:0010029GO:GO:0010148
GO:GO:0010161GO:GO:0010202GO:GO:0010218GO:GO:0010244GO:GO:0010374GO:GO:0010617
GO:GO:0015979GO:GO:0016043GO:GO:0016301GO:GO:0016604GO:GO:0016740GO:GO:0017006
GO:GO:0017012GO:GO:0018298GO:GO:0019538GO:GO:0019725GO:GO:0023014GO:GO:0031347
GO:GO:0031516GO:GO:0031517GO:GO:0038023GO:GO:0042802GO:GO:0042803GO:GO:0043565
GO:GO:0045892GO:GO:1990841GO:GO:2000028InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/P
InterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016InterPro:IPR036890
UniProt:M4E095InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2InterPro:PAS_foldPFAM:PF00360
PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518PFAM:PF08446PIRSF:PIRSF000084
PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109PFscan:PS50112PANTHER:PTHR43719
PANTHER:PTHR43719:SF12InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:PhytochromeInterPro:Phytochrome_A-EInterPro:Phytochrome_cen-reg
SMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388SUPFAM:SSF55781SUPFAM:SSF55785
SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0002547625SEG:seg::
Description
AT4G16250 (E=0.0) PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer
Coordinates
chrA05:-:19185276..19189180
Molecular Weight (calculated)
131485.0 Da
IEP (calculated)
5.809
GRAVY (calculated)
-0.096
Length
1192 amino acids
Sequence
(BLAST)
0001: MVSGVGGGGG SGGSGRGGGR GGEESSSTHR REQAQSSGTK SLRPQSQPQT ESISKAIQQY TVDARLHAVF EQSGESGRSF DYSQSLKTTT YGSSVPEQQI
0101: TAYLSRIQRG GYIQPFGCMI AVDESTFAII GYSENAREML GLTPQSVPSL ERPEILAMGT DVRSLFTSSS SVLLERAFVA REITLLNPVW IHSKYTGKPF
0201: YAILHRIDVG VVIDLEPART EDPALSIAGA VQSQKLAVRA ISQLQSLPGG DIKLLCDTVV ESVRDLTGYD RVMVYKFHED EHGEVVAESR REDLEPYIGL
0301: HYPATDIPQA SRFLFKQNRV RMIVDCHATP VLVVQDDRLT QSMCLVGSTL RAPHGCHSQY MANMGSIASL AMAVIINGSE EDGSSVAGGR SAMRLWGLVV
0401: CHHTSSRCIP FPLRYACEFL MQAFGLQLNM ELQLALQMSE KRVLRTQTLL CDMLLRDSPA GIVTQSPSIM DLVKCDGAAF LYHGNYYPLG VAPTEAQIKD
0501: VVEWLLANHA DSTGLSTDSL GDAGYPGAAA LGDAVCGMAV AYITKRDFLF WFRSHTAKEI KWGGAKHHPE DKDDGQRMHP RSSFKAFLEV VKSRSQPWET
0601: AEMDAIHSLQ LILRDSFKES EAAMNSKTAD GAVQPYSMAG EQGIDELGAV AREMVRLIET ATVPIFAVDA GGCINGWNAK IAELTGLSVE EAMGKSLVSD
0701: LIYKENEETV DKLISRALRG TFSSPTMLYL LYGYLIILMR FAGDEDKNVE IKLKTFSPEL QGKAVFVVVN ACSSKDYSNN IVGVCFVGQD VTGQKIVMDK
0801: FINIQGDYKA IVHSPNPLIP PIFAADENTC CLEWNTALEK LTGWSRSEVI GKMLVGEVFG SCCRLKGPDA LTKFMIVLHN AIGGQETDKF PFPFFDRNGK
0901: FVQALLTANK RVSFDGKVIG AFCFLQIPSP ELQQALAVQR RQDTECFTKA KELAYICQVV KNPLSGLRFT NSLLEATDLN EDQKQLLETS VSCEKQISRI
1001: VSDMDLERIE DGSFELVRTE FLLGSVINAI VSQAMFLLKE RGVQLIRDIP EEIKSIQVYG DQTRIQQLLA EFLLSIIRYA PSHEWVEIHI SHVPKQMADG
1101: FYAIRTEFRM ACPGEGLPPE LVRDMFHSSR WTSPEGLGLS VCRKILKIMN GEVQYIRESE RSYFLIILEL PVPMKRPLST ASGSGDMMLM MP
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.