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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • plastid 2
  • cytosol 2
  • nucleus 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
YLoc:cytosol
 plasma membrane: 15069638
nucleus: 15276429
msms PMID: 15276429 doi
MM Khan, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0210700-02
Os01t0286100-01 nucleus
Os01t0570800-01 cytosol
Os01t0753000-01 cytosol
Os01t0756700-01
Os02t0245800-01
Os02t0595700-01
Os02t0603800-01
Os02t0625000-01
Os02t0751900-01
Os02t0771100-01
Os03t0309200-01
Os03t0426900-01
Os03t0645100-01
Os03t0752100-01
Os05t0139100-01 nucleus
Os05t0515700-01 cytosol
Os06t0133800-01
Os06t0222900-01
Os08t0345800-02 cytosol, nucleus
Os09t0298200-01 cytosol, nucleus
Os11t0455500-01
Os12t0616900-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G18790.1 Os02t0625000-01 AT1G04400.1 11089975
AT2G18790.1 Os03t0309200-01 AT2G18790.1 15273290
AT2G18790.1 Os03t0309200-01 AT2G18790.1 19286967
AT2G18790.1 Os01t0570800-01 AT2G26190.1 23964902
AT2G18790.1 Os01t0570800-01 AT2G26190.1 23964902
AT2G18790.1 Os02t0771100-01 AT2G32950.1 11752373
AT2G18790.1 Os03t0645100-01 AT2G34590.1 23964902
AT2G18790.1 Os12t0616900-01 AT2G34590.1 23964902
AT2G18790.1 Os01t0753000-01 AT2G42400.1 22904146
AT2G18790.1 Os05t0515700-01 AT2G42400.1 22904146
AT2G18790.1 Os01t0753000-01 AT2G42400.1 22904146
AT2G18790.1 Os05t0515700-01 AT2G42400.1 22904146
AT2G18790.1 Os06t0133800-01 AT2G45290.1 23964902
AT2G18790.1 Os01t0286100-01 AT2G46970.1 23964902
AT2G18790.1 Os05t0139100-01 AT2G46970.1 23964902
AT2G18790.1 Os01t0286100-01 AT2G46970.1 23964902
AT2G18790.1 Os05t0139100-01 AT2G46970.1 23964902
AT2G18790.1 Os11t0455500-01 AT4G13940.1 23964902
AT2G18790.1 Os03t0309200-01 AT4G16250.1 15273290
AT2G18790.1 Os03t0309200-01 AT4G16250.1 19286967
AT2G18790.1 Os02t0595700-01 AT4G20360.1 23964902
AT2G18790.1 Os03t0426900-01 AT5G15450.1 23964902
AT2G18790.1 Os03t0752100-01 AT5G35840.1 15273290
AT2G18790.1 Os03t0752100-01 AT5G35840.1 19286967
AT2G18790.1 Os01t0210700-02 AT5G46240.1 23964902
AT2G18790.1 Os01t0756700-01 AT5G46240.1 23964902
AT2G18790.1 Os02t0245800-01 AT5G46240.1 23964902
AT2G18790.1 Os08t0345800-02 AT5G48300.1 23964902
AT2G18790.1 Os09t0298200-01 AT5G48300.1 23964902
AT2G18790.1 Os08t0345800-02 AT5G48300.1 23964902
AT2G18790.1 Os09t0298200-01 AT5G48300.1 23964902
AT2G18790.1 Os08t0345800-02 AT5G48300.1 23964902
AT2G18790.1 Os09t0298200-01 AT5G48300.1 23964902
AT2G18790.1 Os02t0603800-01 AT5G60600.1 23964902
AT2G18790.1 Os02t0751900-01 AT5G65090.1 23964902
AT2G18790.1 Os06t0222900-01 AT5G65090.1 23964902
AT4G16250.1 Os03t0309200-01 AT2G18790.1 15273290
AT4G16250.1 Os03t0309200-01 AT2G18790.1 19286967
AT4G16250.1 Os03t0309200-01 AT4G16250.1 15273290
AT4G16250.1 Os03t0309200-01 AT4G16250.1 19286967
AT4G16250.1 Os03t0752100-01 AT5G35840.1 19286967
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G183400.1 Wheat plastid 92.5 89.0
TraesCS4A01G122500.2 Wheat plastid 92.59 88.94
TraesCS4B01G182400.1 Wheat plastid 92.5 88.85
HORVU4Hr1G053400.1 Barley plasma membrane 92.41 88.61
Zm00001d028905_P001 Maize extracellular 90.27 87.08
EER94971 Sorghum plastid 90.71 86.25
Zm00001d047632_P001 Maize plastid 88.93 85.42
Zm00001d025231_P001 Maize cytosol 11.52 80.62
VIT_05s0077g00940.t01 Wine grape cytosol 77.05 76.44
PGSC0003DMT400061712 Potato cytosol, plastid 75.54 74.87
Zm00001d000219_P001 Maize cytosol 7.32 73.87
KRH36969 Soybean nucleus 74.73 73.61
Solyc01g059870.2.1 Tomato cytosol 74.29 73.56
GSMUA_Achr3P08340_001 Banana nucleus 71.25 73.28
KRH11936 Soybean nucleus 75.09 73.19
CDX92112 Canola cytosol 73.84 72.93
AT2G18790.1 Thale cress nucleus 74.02 70.73
CDX95888 Canola cytosol 73.21 70.21
Solyc05g053410.2.1 Tomato nucleus, plastid 70.27 70.21
CDX75900 Canola cytosol 72.23 70.04
PGSC0003DMT400069974 Potato mitochondrion 70.27 69.96
Bra022192.1-P Field mustard cytosol 74.02 69.55
AT4G16250.1 Thale cress plastid 70.8 68.13
Bra001650.1-P Field mustard cytosol 8.57 62.75
CDX82382 Canola cytosol 9.73 59.24
Os03t0719800-01 Rice plastid 47.77 47.43
Zm00001d024238_P001 Maize cytosol 16.79 42.73
CDY42549 Canola cytosol 8.39 41.59
Os03t0752100-01 Rice cytosol 7.23 35.37
Protein Annotations
Gene3D:1.10.287.130MapMan:26.1.1.1MapMan:26.4.1.2Gene3D:3.30.450.20Gene3D:3.30.450.270Gene3D:3.30.450.40
Gene3D:3.30.565.10UniProt:A0A0P0VWK1ProteinID:BAS83844.1InterPro:GAFInterPro:GAF-like_dom_sfGO:GO:0000155
GO:GO:0000160GO:GO:0003674GO:GO:0003824GO:GO:0004871GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0006464GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009584GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009881GO:GO:0009987
GO:GO:0016301GO:GO:0016740GO:GO:0017006GO:GO:0018298GO:GO:0019538GO:GO:0023014
GO:GO:0038023GO:GO:0042803GO:GO:0050896InterPro:HATPase_CInterPro:HATPase_C_sfInterPro:HisK_dim/P
InterPro:HisK_dim/P_sfInterPro:His_kinase_domInterPro:IPR000014InterPro:IPR005467InterPro:IPR016132InterPro:IPR029016
InterPro:IPR036890EnsemblPlantsGene:Os03g0309200EnsemblPlants:Os03t0309200-01InterPro:PASInterPro:PAS-like_dom_sfInterPro:PAS_2
InterPro:PAS_foldPFAM:PF00360PFAM:PF00512PFAM:PF00989PFAM:PF01590PFAM:PF02518
PFAM:PF08446PIRSF:PIRSF000084PRINTS:PR01033ScanProsite:PS00245PFscan:PS50046PFscan:PS50109
PFscan:PS50112PANTHER:PTHR43719PANTHER:PTHR43719:SF12InterPro:Phyto_chromo_BSInterPro:Phyto_chromo_attachmentInterPro:Phytochrome
InterPro:Phytochrome_A-EInterPro:Phytochrome_cen-regSMART:SM00065SMART:SM00091SMART:SM00387SMART:SM00388
SUPFAM:SSF47384SUPFAM:SSF55781SUPFAM:SSF55785SUPFAM:SSF55874TIGRFAMs:TIGR00229UniParc:UPI0001B66B9C
SEG:seg:::::
Description
PHYTOCHROME BSimilar to Phytochrome B. (Os03t0309200-01);Similar to Phytochrome B. (Os03t0309200-02)
Coordinates
chr3:+:11020152..11028141
Molecular Weight (calculated)
124214.0 Da
IEP (calculated)
6.127
GRAVY (calculated)
-0.166
Length
1120 amino acids
Sequence
(BLAST)
0001: GEVRRGKNRT HPQYTLDARL HAVFEQSGAS GRSFDYTQSL RASPTPSSEQ QIAAYLSRIQ RGGHIQPFGC TLAVADDSSF RLLAYSENTA DLLDLSPHHS
0101: VPSLDSSAVP PPVSLGADAR LLFAPSSAVL LERAFAAREI SLLNPLWIHS RVSSKPFYAI LHRIDVGVVI DLEPARTEDP ALSIAGAVQS QKLAVRAISR
0201: LQALPGGDVK LLCDTVVEYV RELTGYDRVM VYRFHEDEHG EVVAESRRNN LEPYIGLHYP ATDIPQASRF LFRQNRVRMI ADCHAAPVRV IQDPALTQPL
0301: CLVGSTLRSP HGCHAQYMAN MGSIASLVMA VIISSGGDDD HNISRGSIPS AMKLWGLVVC HHTSPRCIPF PLRYACEFLM QAFGLQLNME LQLAHQLSEK
0401: HILRTQTLLC DMLLRDSPTG IVTQSPSIMD LVKCDGAALY YHGKYYPLGV TPTEVQIKDI IEWLTMCHGD STGLSTDSLA DAGYPGAAAL GDAVSGMAVA
0501: YITPSDYLFW FRSHTAKEIK WGGAKHHPED KDDGQRMHPR SSFKAFLEVV KSRSLPWENA EMDAIHSLQL ILRDSFRDSA EGTSNSKAIV NGQVQLGELE
0601: LRGIDELSSV AREMVRLIET ATVPIFAVDT DGCINGWNAK VAELTGLSVE EAMGKSLVND LIFKESEETV NKLLSRALRG DEDKNVEIKL KTFGPEQSKG
0701: PIFVIVNACS SRDYTKNIVG VCFVGQDVTG QKVVMDKFIN IQGDYKAIVH NPNPLIPPIF ASDENTCCSE WNTAMEKLTG WSRGEVVGKL LVGEVFGNCC
0801: RLKGPDALTK FMIVLHNAIG GQDCEKFPFS FFDKNGKYVQ ALLTANTRSR MDGEAIGAFC FLQIASPELQ QAFEIQRHHE KKCYARMKEL AYIYQEIKNP
0901: LNGIRFTNSL LEMTDLKDDQ RQFLETSTAC EKQMSKIVKD ASLQSIEDGS LVLEKGEFSL GSVMNAVVSQ VMIQLRERDL QLIRDIPDEI KEASAYGDQY
1001: RIQQVLCDFL LSMVRFAPAE NGWVEIQVRP NIKQNSDGTD TMLFLFRFAC PGEGLPPEIV QDMFSNSRWT TQEGIGLSIC RKILKLMGGE VQYIRESERS
1101: FFHIVLELPQ PQQAASRGTS
Best Arabidopsis Sequence Match ( AT2G18790.1 )
(BLAST)
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.