Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 3
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g053410.2.1 | Tomato | nucleus, plastid | 93.69 | 94.02 |
| PGSC0003DMT400061712 | Potato | cytosol, plastid | 81.6 | 81.24 |
| VIT_05s0077g00940.t01 | Wine grape | cytosol | 78.58 | 78.3 |
| KRH36969 | Soybean | nucleus | 75.02 | 74.23 |
| KRH11936 | Soybean | nucleus | 75.11 | 73.54 |
| Os03t0309200-01 | Rice | nucleus, plasma membrane | 69.96 | 70.27 |
| AT2G18790.1 | Thale cress | nucleus | 71.02 | 68.17 |
| Zm00001d028905_P001 | Maize | extracellular | 70.22 | 68.04 |
| TraesCS4D01G183400.1 | Wheat | plastid | 70.31 | 67.96 |
| TraesCS4B01G182400.1 | Wheat | plastid | 70.22 | 67.75 |
| TraesCS4A01G122500.2 | Wheat | plastid | 70.22 | 67.75 |
| HORVU4Hr1G053400.1 | Barley | plasma membrane | 70.31 | 67.72 |
| GSMUA_Achr3P08340_001 | Banana | nucleus | 65.33 | 67.49 |
| Bra022192.1-P | Field mustard | cytosol | 71.47 | 67.45 |
| EER94971 | Sorghum | plastid | 70.22 | 67.06 |
| Zm00001d047632_P001 | Maize | plastid | 68.98 | 66.55 |
| AT4G16250.1 | Thale cress | plastid | 68.44 | 66.15 |
| Bra001650.1-P | Field mustard | cytosol | 8.09 | 59.48 |
| Zm00001d025231_P001 | Maize | cytosol | 8.27 | 58.12 |
| PGSC0003DMT400007944 | Potato | cytosol, plastid | 57.69 | 57.13 |
| Zm00001d000219_P001 | Maize | cytosol | 5.51 | 55.86 |
| PGSC0003DMT400044822 | Potato | plastid | 53.33 | 53.57 |
| PGSC0003DMT400040772 | Potato | cytosol | 51.38 | 51.47 |
| CDY42549 | Canola | cytosol | 8.44 | 42.04 |
| Zm00001d024238_P001 | Maize | cytosol | 13.24 | 33.86 |
Protein Annotations
| Gene3D:1.10.287.130 | EntrezGene:102580316 | MapMan:26.1.1.1 | MapMan:26.4.1.2 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 |
| Gene3D:3.30.450.40 | Gene3D:3.30.565.10 | ProteinID:AAD01517 | ProteinID:AAD01517.1 | EMBL:AF014159 | ncoils:Coil |
| InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0000155 | GO:GO:0000160 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 | GO:GO:0009585 | GO:GO:0009605 |
| GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016740 | GO:GO:0017006 |
| GO:GO:0018298 | GO:GO:0019538 | GO:GO:0023014 | GO:GO:0038023 | GO:GO:0042803 | GO:GO:0050896 |
| InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:HisK_dim/P | InterPro:His_kinase_dom | InterPro:IPR000014 | InterPro:IPR005467 |
| InterPro:IPR016132 | InterPro:IPR029016 | InterPro:IPR036890 | UniProt:M1CLI4 | InterPro:PAS | InterPro:PAS-like_dom_sf |
| InterPro:PAS_2 | InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00512 | PFAM:PF00989 | PFAM:PF01590 |
| PFAM:PF02518 | PFAM:PF08446 | EnsemblPlantsGene:PGSC0003DMG400027211 | PGSC:PGSC0003DMG400027211 | EnsemblPlants:PGSC0003DMT400069974 | PIRSF:PIRSF000084 |
| PRINTS:PR01033 | ScanProsite:PS00245 | PFscan:PS50046 | PFscan:PS50109 | PFscan:PS50112 | PANTHER:PTHR43719 |
| PANTHER:PTHR43719:SF12 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment | InterPro:Phytochrome | InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg |
| SMART:SM00065 | SMART:SM00091 | SMART:SM00387 | SMART:SM00388 | SUPFAM:SSF55781 | SUPFAM:SSF55785 |
| SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 | UniParc:UPI0002967280 | RefSeq:XP_006355734.1 | SEG:seg | : |
Description
Phytochrome B2 [Source:PGSC_GENE;Acc:PGSC0003DMG400027211]
Coordinates
chr5:-:48658260..48663675
Molecular Weight (calculated)
125789.0 Da
IEP (calculated)
6.024
GRAVY (calculated)
-0.145
Length
1125 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASGSGSRGK YGRNHQPKNQ SQFSVTSNNA LSKAVAQYTT DARLHAAFEQ SGESFDYSQS VRNTTESVTE HQITAYLNKM QRGGHIQPFG CTIAVDELSF
0101: CVIAYSENAC EMLDIMPQSV PSLEKTEILK IGTDVRTLFS SSSSGLLEGA FGAREITLLN PIWVHSKNSG KPFYAILHRI DVGIVIDLEP ARTEDPALSI
0201: AGAVQSQKLA VRAISLLQSL PGGDIDLLCD TVVKSVRELT GYDRVMVYKF HDDEHGEVVA ERRRSDLEPY IGLHYPATDI PQASRFLFKQ NRVRMIVDCT
0301: ATPVRVIQDE LLKQPLCLVG STLRAPHGCH PQYMVNMGNV ASLTLAVVIN GNDDEVAGGR NAMRLWGLVV GHHSSTRFTP YPLRYACEFL MQAFGLQLNM
0401: ELQLASQLAE KRVLRTQTLL CDMLLRDSPT GIVTQNPSIV DLVKCDGAAL YYQGRYYPLG ITPAEAQIKG IVEWLLTCHV DSTGLSTDSL ADAGYPEAAS
0501: LGAAVCGMAV AYVTSKYFLF WFRSHTASEI KWGGAKHHPE DKDDWQKMHP RSSFKAFLEV VKSRSLPWEN AEMDAIHSLQ LILRDSFKDA EASNSKAIVH
0601: VQLQEEGLQG MDELRSVARE MVRLVETATA PIFAVDVEGR INGWNAKVAE LTELSVEEAI GKSLVHDLVH EESQRTAENL IHNALRGEED KNIEIKLRTF
0701: GAEQLKKTVF VVVNACSSKD YTNNIVGVCF IGQDITAQKV VLDKFVRIQG DYKAIMHSPN PLIPPIFVSD ENTCCFEWNT AMEKLSGWNK EEIIGKMLVG
0801: EIFGTFCQLK GPDAMTKFMI MLHKAIGGQE IDKFPFSFSD RNGKSVQALL TANKRVNVDG QIIGAFCFLQ IASPELQKTL LQRQQEKTSN FRMKELAYIL
0901: REIKNPLNGI RFTNSLLEAT ELTENQKQFL ETSAACERQM FKIIRDVDLD NIEDGSLELE KGEFFLASVI DAVVSQVMLL LRERGVQLIR DIPDEIKTLR
1001: VYGDQVRIQQ VFADFLQIMA SYTPSRQGWV EVHLQPSINQ ISDGATMVHI EFRIVCPGEG LPHELIQDMF HNSQWVTQQG LGLSMCRRIL QLMNGQVQYI
1101: RESERCFFLI ILQLPMPQSD SMSVR
0101: CVIAYSENAC EMLDIMPQSV PSLEKTEILK IGTDVRTLFS SSSSGLLEGA FGAREITLLN PIWVHSKNSG KPFYAILHRI DVGIVIDLEP ARTEDPALSI
0201: AGAVQSQKLA VRAISLLQSL PGGDIDLLCD TVVKSVRELT GYDRVMVYKF HDDEHGEVVA ERRRSDLEPY IGLHYPATDI PQASRFLFKQ NRVRMIVDCT
0301: ATPVRVIQDE LLKQPLCLVG STLRAPHGCH PQYMVNMGNV ASLTLAVVIN GNDDEVAGGR NAMRLWGLVV GHHSSTRFTP YPLRYACEFL MQAFGLQLNM
0401: ELQLASQLAE KRVLRTQTLL CDMLLRDSPT GIVTQNPSIV DLVKCDGAAL YYQGRYYPLG ITPAEAQIKG IVEWLLTCHV DSTGLSTDSL ADAGYPEAAS
0501: LGAAVCGMAV AYVTSKYFLF WFRSHTASEI KWGGAKHHPE DKDDWQKMHP RSSFKAFLEV VKSRSLPWEN AEMDAIHSLQ LILRDSFKDA EASNSKAIVH
0601: VQLQEEGLQG MDELRSVARE MVRLVETATA PIFAVDVEGR INGWNAKVAE LTELSVEEAI GKSLVHDLVH EESQRTAENL IHNALRGEED KNIEIKLRTF
0701: GAEQLKKTVF VVVNACSSKD YTNNIVGVCF IGQDITAQKV VLDKFVRIQG DYKAIMHSPN PLIPPIFVSD ENTCCFEWNT AMEKLSGWNK EEIIGKMLVG
0801: EIFGTFCQLK GPDAMTKFMI MLHKAIGGQE IDKFPFSFSD RNGKSVQALL TANKRVNVDG QIIGAFCFLQ IASPELQKTL LQRQQEKTSN FRMKELAYIL
0901: REIKNPLNGI RFTNSLLEAT ELTENQKQFL ETSAACERQM FKIIRDVDLD NIEDGSLELE KGEFFLASVI DAVVSQVMLL LRERGVQLIR DIPDEIKTLR
1001: VYGDQVRIQQ VFADFLQIMA SYTPSRQGWV EVHLQPSINQ ISDGATMVHI EFRIVCPGEG LPHELIQDMF HNSQWVTQQG LGLSMCRRIL QLMNGQVQYI
1101: RESERCFFLI ILQLPMPQSD SMSVR
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.