Factsheet for PGSC0003DMT400092196

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071790.2.1	Tomato	nucleus, plastid	92.87	98.44
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	91.19	91.19
GSMUA_AchrUn_...	Banana	cytosol	34.59	90.16
VIT_17s0000g09370.t01	Wine grape	plastid	84.7	83.13
Bra033753.1-P	Field mustard	plastid	82.18	82.7
Bra013458.1-P	Field mustard	plastid	81.34	82.55
CDX82758	Canola	plastid	49.06	82.39
KRH57147	Soybean	plastid	82.39	82.05
Bra038805.1-P	Field mustard	plastid	81.55	81.89
AT4G20360.1	Thale cress	plastid	81.55	81.72
CDX98668	Canola	plastid	46.75	80.51
Bra020926.1-P	Field mustard	plastid	71.91	80.33
CDY49022	Canola	plastid	57.44	79.88
CDY49485	Canola	plastid	57.02	79.53
Zm00001d017092_P001	Maize	plastid	76.73	78.71
CDX94002	Canola	plastid	46.54	78.45
EES05366	Sorghum	plastid	76.31	78.11
Zm00001d050969_P001	Maize	plastid	76.31	78.11
KRH03857	Soybean	plastid	73.17	78.08
Os02t0595700-01	Rice	plastid	76.31	77.94
CDY54570	Canola	plastid	50.94	77.88
CDX78988	Canola	plastid	49.27	77.81
CDY31442	Canola	plastid	50.52	77.24
GSMUA_Achr6P06690_001	Banana	mitochondrion, plastid	50.1	76.36
TraesCS6B01G238600.1	Wheat	plastid	74.84	76.28
TraesCS6A01G209800.1	Wheat	plastid	75.05	76.17
TraesCS6D01G193000.1	Wheat	nucleus, plastid	75.05	76.17
HORVU6Hr1G053680.5	Barley	plastid	70.23	65.18
PGSC0003DMT400009804	Potato	mitochondrion	58.07	61.56
PGSC0003DMT400037909	Potato	plastid	57.86	61.2
PGSC0003DMT400020968	Potato	cytosol	26.83	28.64
PGSC0003DMT400053547	Potato	cytosol	26.83	28.57
PGSC0003DMT400053553	Potato	cytosol	26.83	28.57
PGSC0003DMT400059830	Potato	cytosol	26.83	28.57
PGSC0003DMT400059832	Potato	cytosol	26.83	28.57
PGSC0003DMT400050663	Potato	cytosol	26.42	28.19
PGSC0003DMT400014425	Potato	cytosol	22.85	22.2

Protein Annotations

EntrezGene:102584165	MapMan:17.7.4.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTU_2	InterPro:EFTu-like_2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M1DPA6
HAMAP:MF_00118_B	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	EnsemblPlantsGene:PGSC0003DMG400041767
PGSC:PGSC0003DMG400041767	EnsemblPlants:PGSC0003DMT400092196	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR43721
PANTHER:PTHR43721:SF13	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00231	TIGRFAMs:TIGR00485	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EFTu/EF1A_C	InterPro:Transl_elong_EFTu/EF1A_bac/org
UniParc:UPI000295C71A	RefSeq:XP_006347424.1	SEG:seg	:	:	:

Description

Elongation factor TuB, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400041767]

Coordinates

chr6:-:52596634..52598067

Molecular Weight (calculated)

51746.5 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.161

Length

477 amino acids

Sequence
(BLAST)

001: MASISAASAT AAAASTKINT SGGSVLPSKS SKLILSSSFT PTPSTLFLHS PATTTPSSST RHRRFTVRAA RGKFERKKPH VNIGTIGHVD HGKTTLTAAL
101: TMALASLGNS TPKKYDEIDA APEERARGIT INTATVEYET ENRHYAHVDC PGHADYVKNM ITGAAQMDGA ILVVSGADGP MPQTKEHILL AKQVGVPNMV
201: VFLNKEDQVD DEELLELVEL EVRELLSSYE FPGDDIPIHC GSALLALEAL MANPSIKRGD DQWVDKIYKL MDSVDEYIPI PQRQTELPFL MAIEDVFSIT
301: GRGTVATGRV ERGTVKTGEI VDIVGLKDTR NTTVTGVEMF QKILDEAMAG DNVGLLLRGI QKIDIQRGMV LAKPGSITPH TKFEALVYVL KKEEGGRHSP
401: FFAGYRPQFY MRTTDVTGKV TAIMTDKGEE SKMVMPGDRV NMVVELIMPV ACEQGMRFAI REGGKTVGAG VIQKILE

Best Arabidopsis Sequence Match ( AT4G20360.2 )
(BLAST)

001: MAISAPAACS SSSRILCSYS SPSPSLCPAI STSGKLKTLT LSSSFLPSYS LTTTSASQST RRSFTVRAAR GKFERKKPHV NIGTIGHVDH GKTTLTAALT
101: MALASIGSSV AKKYDEIDAA PEERARGITI NTATVEYETE NRHYAHVDCP GHADYVKNMI TGAAQMDGAI LVVSGADGPM PQTKEHILLA KQVGVPDMVV
201: FLNKEDQVDD AELLELVELE VRELLSSYEF NGDDIPIISG SALLAVETLT ENPKVKRGDN KWVDKIYELM DAVDDYIPIP QRQTELPFLL AVEDVFSITG
301: RGTVATGRVE RGTVKVGETV DLVGLRETRS YTVTGVEMFQ KILDEALAGD NVGLLLRGIQ KADIQRGMVL AKPGSITPHT KFEAIIYVLK KEEGGRHSPF
401: FAGYRPQFYM RTTDVTGKVT KIMNDKDEES KMVMPGDRVK IVVELIVPVA CEQGMRFAIR EGGKTVGAGV IGTILE

Arabidopsis Description

TUFAElongation factor Tu, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P17745]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.