Factsheet for PGSC0003DMT400050663

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
vacuole 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	PGSC0003DMT400043358	AT3G54220.1	19228333
AT1G07930.1	PGSC0003DMT400043358	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069700.1.1	Tomato	nucleus	99.78	99.78
GSMUA_Achr5P24440_001	Banana	cytosol	28.19	99.21
CDY09214	Canola	cytosol	35.12	98.12
PGSC0003DMT400020968	Potato	cytosol	97.54	97.54
KRG93959	Soybean	nucleus	97.32	97.32
KRH58241	Soybean	nucleus	97.32	97.32
HORVU5Hr1G051280.1	Barley	cytosol	22.6	97.12
PGSC0003DMT400059832	Potato	cytosol	97.32	97.1
PGSC0003DMT400059830	Potato	cytosol	97.32	97.1
PGSC0003DMT400053553	Potato	cytosol	97.32	97.1
PGSC0003DMT400053547	Potato	cytosol	97.32	97.1
KRH07098	Soybean	cytosol, mitochondrion, nucleus	96.87	96.87
Os03t0177400-01	Rice	cytosol	96.87	96.87
Os03t0177500-01	Rice	cytosol	96.87	96.87
Os03t0177900-01	Rice	plasma membrane	96.87	96.87
Os03t0178000-02	Rice	cytosol	96.87	96.87
Zm00001d046449_P003	Maize	cytosol	96.64	96.64
KRH34904	Soybean	nucleus	96.64	96.43
Zm00001d036904_P001	Maize	cytosol	96.42	96.42
VIT_08s0040g02330.t01	Wine grape	cytosol	96.42	96.42
KXG20299	Sorghum	cytosol	96.42	96.42
KXG20296	Sorghum	cytosol	96.42	96.42
KXG20294	Sorghum	cytosol	96.42	96.42
KXG20293	Sorghum	cytosol	96.42	96.42
Zm00001d037873_P010	Maize	cytosol	97.09	96.23
Zm00001d009870_P008	Maize	cytosol	97.09	96.23
Zm00001d037882_P001	Maize	cytosol	39.82	96.22
CDY06287	Canola	cytosol	48.77	96.04
Zm00001d037905_P010	Maize	cytosol	96.87	96.01
Zm00001d037875_P014	Maize	cytosol	96.87	96.01
Zm00001d037877_P014	Maize	cytosol	96.87	96.01
KRH57863	Soybean	nucleus	95.97	95.97
Bra031601.1-P	Field mustard	cytosol	42.51	95.96
Zm00001d009868_P015	Maize	cytosol	96.64	95.79
AT1G07930.1	Thale cress	cytosol	96.2	95.77
AT1G07920.1	Thale cress	cytosol	96.2	95.77
AT1G07940.3	Thale cress	cytosol	96.2	95.77
AT5G60390.2	Thale cress	cytosol	96.2	95.77
KRH04781	Soybean	endoplasmic reticulum	95.53	95.53
CDX88757	Canola	cytosol	85.68	95.51
GSMUA_Achr10P...	Banana	cytosol	59.51	95.34
Bra018669.1-P	Field mustard	cytosol	95.75	95.32
Bra031602.1-P	Field mustard	cytosol	95.75	95.32
Bra002483.1-P	Field mustard	cytosol	95.75	95.32
HORVU4Hr1G056740.1	Barley	cytosol	95.3	95.3
TraesCS5B01G418200.1	Wheat	cytosol	95.3	95.3
TraesCS5B01G418100.1	Wheat	cytosol	95.3	95.3
TraesCS4B01G196900.1	Wheat	golgi	95.3	95.3
Bra020253.1-P	Field mustard	cytosol	95.53	95.1
Bra018242.1-P	Field mustard	cytosol	95.53	95.1
CDY61938	Canola	cytosol	91.05	95.09
CDY34479	Canola	cytosol	91.05	95.09
CDY09211	Canola	cytosol	91.05	95.09
CDY10804	Canola	cytosol	91.05	95.09
GSMUA_Achr10P...	Banana	cytosol	59.96	95.04
CDY67375	Canola	cytosol	59.06	94.96
TraesCS4A01G107600.1	Wheat	cytosol	94.85	94.85
TraesCS5A01G415600.1	Wheat	cytosol	94.85	94.85
TraesCS5A01G415400.1	Wheat	cytosol	94.85	94.85
TraesCS4A01G107700.1	Wheat	cytosol	94.85	94.85
CDY22710	Canola	cytosol	90.6	94.85
CDY22711	Canola	cytosol	90.6	94.85
Bra031605.1-P	Field mustard	cytosol	90.6	94.85
Bra020251.1-P	Field mustard	cytosol	87.25	94.66
CDY06289	Canola	cytosol	54.14	94.53
Bra006661.1-P	Field mustard	cytosol	94.85	94.43
HORVU4Hr1G056830.1	Barley	cytosol	61.52	93.86
CDY69678	Canola	cytosol	23.94	93.04
CDY67376	Canola	cytosol	23.94	93.04
CDY06288	Canola	cytosol	23.94	93.04
CDY06290	Canola	cytosol	23.94	93.04
OQU75582	Sorghum	cytosol	25.95	92.8
GSMUA_Achr6P04090_001	Banana	cytosol	40.72	92.39
HORVU5Hr1G100200.3	Barley	mitochondrion	95.3	91.81
HORVU5Hr1G100700.3	Barley	plasma membrane	95.3	91.61
HORVU4Hr1G056820.1	Barley	plasma membrane	95.75	89.92
HORVU6Hr1G085320.3	Barley	cytosol	88.59	89.8
Zm00001d009887_P001	Maize	cytosol	29.31	89.73
GSMUA_AchrUn_...	Banana	cytosol	41.61	89.0
GSMUA_Achr3P17840_001	Banana	cytosol	30.2	88.82
CDX93604	Canola	cytosol	91.05	88.48
CDX70032	Canola	cytosol	68.01	88.37
TraesCS4B01G196800.2	Wheat	golgi	95.3	88.2
CDX95108	Canola	cytosol, extracellular	95.75	87.89
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	80.09	87.75
HORVU6Hr1G085370.1	Barley	cytosol	88.14	87.17
OQU75597	Sorghum	cytosol	33.33	85.14
GSMUA_Achr10P...	Banana	cytosol, plastid	39.15	81.4
Bra030707.1-P	Field mustard	cytosol	95.75	72.54
CDY58828	Canola	cytosol	90.6	71.3
GSMUA_Achr6P02020_001	Banana	mitochondrion	53.47	69.08
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	15.88	66.98
PGSC0003DMT400014425	Potato	cytosol	34.0	30.96
PGSC0003DMT400037909	Potato	plastid	28.41	28.16
PGSC0003DMT400009804	Potato	mitochondrion	28.19	28.0
PGSC0003DMT400046837	Potato	cytosol, extracellular, plastid	28.64	26.83
PGSC0003DMT400092196	Potato	plastid	28.19	26.42

Protein Annotations

EntrezGene:102598326	MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	UniProt:M1BQM9
HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	EnsemblPlantsGene:PGSC0003DMG400019677
PGSC:PGSC0003DMG400019677	EnsemblPlants:PGSC0003DMT400050663	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115
PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom	TIGRFAMs:TIGR00483
InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000296C76A	RefSeq:XP_006340223.1
RefSeq:XP_015170758.1	:	:	:	:	:

Description

Elongation factor 1-alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400019677]

Coordinates

chr11:-:42006169..42008992

Molecular Weight (calculated)

49247.8 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.321

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKVHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVRQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQLNEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVTFGP TGLTTEVKSV EMHHEALQEA LPGDNVGFNV
301: KNVAVKDLKR GFVASNSKDD PAKGAASFTA QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AEILTKIDRR SGKELEKEPK FLKNGDAGMV KMIPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPSGAKVT KAAQKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.