CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG22896
OQU82754

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	KXG22896	AT3G54220.1	19228333
AT1G07920.1	OQU82754	AT3G54220.1	19228333
AT1G07930.1	KXG22896	AT3G54220.1	19228333
AT1G07930.1	OQU82754	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20293	Sorghum	cytosol	100.0	100.0
KXG20294	Sorghum	cytosol	100.0	100.0
KXG20299	Sorghum	cytosol	100.0	100.0
Zm00001d036904_P001	Maize	cytosol	99.78	99.78
Zm00001d046449_P003	Maize	cytosol	99.33	99.33
GSMUA_Achr5P24440_001	Banana	cytosol	28.19	99.21
Os03t0177400-01	Rice	cytosol	98.66	98.66
Os03t0177500-01	Rice	cytosol	98.66	98.66
Os03t0177900-01	Rice	plasma membrane	98.66	98.66
Os03t0178000-02	Rice	cytosol	98.66	98.66
CDY09214	Canola	cytosol	35.12	98.12
HORVU5Hr1G051280.1	Barley	cytosol	22.82	98.08
KRG93959	Soybean	nucleus	97.32	97.32
KRH58241	Soybean	nucleus	97.32	97.32
KRH07098	Soybean	cytosol, mitochondrion, nucleus	96.87	96.87
GSMUA_Achr10P...	Banana	cytosol	61.07	96.81
EER97380	Sorghum	cytosol	96.42	96.42
PGSC0003DMT400050663	Potato	cytosol	96.42	96.42
GSMUA_Achr10P...	Banana	cytosol	60.18	96.42
Solyc11g069700.1.1	Tomato	nucleus	96.2	96.2
VIT_06s0004g03240.t01	Wine grape	cytosol	96.2	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	16.55	96.1
CDY06287	Canola	cytosol	48.77	96.04
Solyc06g005060.2.1	Tomato	cytosol	96.2	95.98
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	96.2	95.98
HORVU4Hr1G056740.1	Barley	cytosol	95.97	95.97
TraesCS4B01G196900.1	Wheat	golgi	95.97	95.97
TraesCS4D01G197100.1	Wheat	cytosol	95.97	95.97
TraesCS4D01G197200.1	Wheat	cytosol	95.97	95.97
TraesCS5B01G418100.1	Wheat	cytosol	95.97	95.97
TraesCS5B01G418200.1	Wheat	cytosol	95.97	95.97
TraesCS5D01G423300.1	Wheat	cytosol	95.97	95.97
TraesCS5D01G423400.1	Wheat	cytosol	95.97	95.97
VIT_08s0040g02330.t01	Wine grape	cytosol	95.97	95.97
Bra031601.1-P	Field mustard	cytosol	42.51	95.96
KRH57863	Soybean	nucleus	95.75	95.75
KRH34904	Soybean	nucleus	95.75	95.54
PGSC0003DMT400020968	Potato	cytosol	95.53	95.53
TraesCS4A01G107600.1	Wheat	cytosol	95.53	95.53
TraesCS4A01G107700.1	Wheat	cytosol	95.53	95.53
TraesCS5A01G415400.1	Wheat	cytosol	95.53	95.53
TraesCS5A01G415600.1	Wheat	cytosol	95.53	95.53
Solyc06g009960.1.1	Tomato	cytosol	87.47	95.37
CDY67375	Canola	cytosol	59.28	95.32
AT1G07920.1	Thale cress	cytosol	95.75	95.32
AT1G07930.1	Thale cress	cytosol	95.75	95.32
AT1G07940.3	Thale cress	cytosol	95.75	95.32
AT5G60390.2	Thale cress	cytosol	95.75	95.32
Bra002483.1-P	Field mustard	cytosol	95.75	95.32
Bra018669.1-P	Field mustard	cytosol	95.75	95.32
Bra031602.1-P	Field mustard	cytosol	95.75	95.32
KRH04781	Soybean	endoplasmic reticulum	95.3	95.3
CDX88757	Canola	cytosol	85.46	95.26
Bra018242.1-P	Field mustard	cytosol	95.53	95.1
Bra020253.1-P	Field mustard	cytosol	95.53	95.1
CDY09211	Canola	cytosol	91.05	95.09
CDY10804	Canola	cytosol	91.05	95.09
CDY34479	Canola	cytosol	91.05	95.09
CDY61938	Canola	cytosol	91.05	95.09
PGSC0003DMT400053547	Potato	cytosol	95.3	95.09
PGSC0003DMT400053553	Potato	cytosol	95.3	95.09
PGSC0003DMT400059830	Potato	cytosol	95.3	95.09
PGSC0003DMT400059832	Potato	cytosol	95.3	95.09
Bra031605.1-P	Field mustard	cytosol	90.6	94.85
CDY22710	Canola	cytosol	90.6	94.85
CDY22711	Canola	cytosol	90.6	94.85
CDY06289	Canola	cytosol	54.14	94.53
Bra006661.1-P	Field mustard	cytosol	94.85	94.43
Bra020251.1-P	Field mustard	cytosol	87.02	94.42
VIT_13s0019g03920.t01	Wine grape	cytosol	95.53	93.85
OQU75582	Sorghum	cytosol	26.17	93.6
HORVU4Hr1G056830.1	Barley	cytosol	61.3	93.52
HORVU5Hr1G100200.3	Barley	mitochondrion	95.97	92.46
GSMUA_Achr6P04090_001	Banana	cytosol	40.72	92.39
HORVU5Hr1G100700.3	Barley	plasma membrane	95.97	92.26
CDY06288	Canola	cytosol	23.49	91.3
CDY06290	Canola	cytosol	23.49	91.3
CDY67376	Canola	cytosol	23.49	91.3
CDY69678	Canola	cytosol	23.49	91.3
GSMUA_Achr3P17840_001	Banana	cytosol	30.65	90.13
HORVU6Hr1G085320.3	Barley	cytosol	88.81	90.02
HORVU4Hr1G056820.1	Barley	plasma membrane	95.53	89.71
GSMUA_AchrUn_...	Banana	cytosol	41.61	89.0
TraesCS4B01G196800.2	Wheat	golgi	95.97	88.82
CDX93604	Canola	cytosol	91.05	88.48
CDX70032	Canola	cytosol	68.01	88.37
CDX95108	Canola	cytosol, extracellular	95.75	87.89
HORVU6Hr1G085370.1	Barley	cytosol	88.59	87.61
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	79.64	87.25
OQU75597	Sorghum	cytosol	33.56	85.71
TraesCS2D01G320300.1	Wheat	cytosol, nucleus, plastid	30.43	85.53
TraesCS2D01G320500.1	Wheat	cytosol	69.13	83.74
VIT_06s0004g03220.t01	Wine grape	cytosol	96.2	83.01
GSMUA_Achr10P...	Banana	cytosol, plastid	39.15	81.4
VIT_19s0014g04110.t01	Wine grape	cytosol	21.92	80.99
Bra030707.1-P	Field mustard	cytosol	95.75	72.54
CDY58828	Canola	cytosol	90.6	71.3
GSMUA_Achr6P02020_001	Banana	mitochondrion	53.47	69.08
EES10540	Sorghum	cytosol	36.69	30.48
EER90508	Sorghum	mitochondrion	28.41	28.04
EES05366	Sorghum	plastid	26.62	25.54
EES12776	Sorghum	cytosol	35.12	23.16
EES13106	Sorghum	cytosol	35.12	22.36

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	UniProt:A0A194YJY9	InterPro:EFTu-like_2	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006412	GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	ProteinID:KXG20293.1
ProteinID:KXG20294.1	ProteinID:KXG20295.1	EnsemblPlants:KXG20296	ProteinID:KXG20296	ProteinID:KXG20296.1	ProteinID:KXG20297.1
ProteinID:KXG20298.1	ProteinID:KXG20299.1	ProteinID:KXG20300.1	HAMAP:MF_00118_A	InterPro:P-loop_NTPase	PFAM:PF00009
PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722	PANTHER:PTHR23115
PANTHER:PTHR23115:SF230	EnsemblPlantsGene:SORBI_3010G182300	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00483	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc	InterPro:Transl_elong_EFTu/EF1A_C	UniParc:UPI000189CFAF
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:52198685..52202156

Molecular Weight (calculated)

49293.8 Da

IEP (calculated)

9.559

GRAVY (calculated)

-0.327

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKTHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI VKEVSSYLKK VGYNPDKIHF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DLINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGII KPGMVVTFGP SGLTTEVKSV EMHHEALQEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKEAASFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AELVTKIDRR SGKELEKEPK FLKNGDAGMV KMVPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVE KKDPTGAKVT KAAAKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.