Factsheet for TraesCS4D01G197100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G056740.1	Barley	cytosol	100.0	100.0
TraesCS4D01G197200.1	Wheat	cytosol	100.0	100.0
TraesCS5D01G423300.1	Wheat	cytosol	100.0	100.0
TraesCS5D01G423400.1	Wheat	cytosol	100.0	100.0
HORVU4Hr1G056830.1	Barley	cytosol	65.32	99.66
TraesCS2D01G080900.1	Wheat	cytosol, golgi, unclear	96.87	96.87
TraesCS2D01G080800.1	Wheat	cytosol	96.87	96.87
Os03t0177500-01	Rice	cytosol	96.64	96.64
Os03t0178000-02	Rice	cytosol	96.64	96.64
Os03t0177900-01	Rice	plasma membrane	96.64	96.64
Os03t0177400-01	Rice	cytosol	96.64	96.64
Zm00001d046449_P003	Maize	cytosol	96.42	96.42
Zm00001d037882_P001	Maize	cytosol	39.82	96.22
KXG20299	Sorghum	cytosol	95.97	95.97
KXG20296	Sorghum	cytosol	95.97	95.97
KXG20294	Sorghum	cytosol	95.97	95.97
KXG20293	Sorghum	cytosol	95.97	95.97
Zm00001d037877_P014	Maize	cytosol	96.64	95.79
Zm00001d037875_P014	Maize	cytosol	96.64	95.79
Zm00001d036904_P001	Maize	cytosol	95.75	95.75
Zm00001d037905_P010	Maize	cytosol	96.42	95.57
Zm00001d009870_P008	Maize	cytosol	96.42	95.57
Zm00001d037873_P010	Maize	cytosol	96.42	95.57
Zm00001d009868_P015	Maize	cytosol	95.97	95.12
OQU75582	Sorghum	cytosol	26.17	93.6
HORVU4Hr1G056820.1	Barley	plasma membrane	99.55	93.49
TraesCS4B01G196800.2	Wheat	golgi	100.0	92.55
Zm00001d009887_P001	Maize	cytosol	29.31	89.73
OQU75597	Sorghum	cytosol	33.78	86.29
TraesCS2D01G320300.1	Wheat	cytosol, nucleus, plastid	30.43	85.53
TraesCS2D01G320500.1	Wheat	cytosol	68.9	83.47
TraesCS2D01G323300.1	Wheat	cytosol, mitochondrion	16.11	67.92
TraesCS2D01G075300.1	Wheat	cytosol	35.57	29.83
TraesCS5D01G542300.1	Wheat	mitochondrion	27.52	27.27
TraesCS6D01G193000.1	Wheat	nucleus, plastid	27.07	25.74
TraesCS2D01G443300.1	Wheat	cytosol	34.45	22.65
TraesCS2D01G562000.1	Wheat	cytosol	33.78	18.53

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00483	EnsemblPlantsGene:TraesCS4D01G197100	EnsemblPlants:TraesCS4D01G197100.1	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc
InterPro:Transl_elong_EFTu/EF1A_C	TIGR:cd01883	TIGR:cd03693	TIGR:cd03705	:	:

Description

No Description!

Coordinates

chr4D:-:341695112..341697077

Molecular Weight (calculated)

49171.8 Da

IEP (calculated)

9.661

GRAVY (calculated)

-0.273

Length

447 amino acids

Sequence
(BLAST)

001: MGKEKTHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYEEI VKEVSSYLKK VGYNPDKVPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGVI KPGMVVTFGP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GFVASNSKDD PAKEAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF AELVTKIDRR SGKELEALPK FLKNGDAGIV KMIPTKPMVV
401: ETFATYPPLG RFAVRDMRQT VAVGVIKGVE KKDPTGAKVT KAAIKKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.