Factsheet for TraesCS4B01G196800.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4D01G122000.1
TraesCS5A01G144000.1
TraesCS5B01G143100.1
TraesCS5D01G148000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07920.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G07920.1	TraesCS5D01G148000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G07930.1	TraesCS5D01G148000.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G056740.1	Barley	cytosol	92.55	100.0
TraesCS5B01G418200.1	Wheat	cytosol	92.55	100.0
TraesCS5B01G418100.1	Wheat	cytosol	92.55	100.0
TraesCS4D01G197100.1	Wheat	cytosol	92.55	100.0
TraesCS4B01G196900.1	Wheat	golgi	92.55	100.0
HORVU4Hr1G056830.1	Barley	cytosol	60.46	99.66
GSMUA_Achr5P24440_001	Banana	cytosol	26.09	99.21
CDY09214	Canola	cytosol	32.71	98.75
KRH07098	Soybean	cytosol, mitochondrion, nucleus	89.65	96.87
TraesCS2B01G097100.1	Wheat	cytosol	89.65	96.87
TraesCS2B01G097300.1	Wheat	cytosol	89.65	96.87
Os03t0178000-02	Rice	cytosol	89.44	96.64
KRG93959	Soybean	nucleus	89.44	96.64
Os03t0177400-01	Rice	cytosol	89.44	96.64
Os03t0177500-01	Rice	cytosol	89.44	96.64
Os03t0177900-01	Rice	plasma membrane	89.44	96.64
Zm00001d046449_P003	Maize	cytosol	89.23	96.42
Zm00001d037882_P001	Maize	cytosol	36.85	96.22
KRH58241	Soybean	nucleus	89.03	96.2
GSMUA_Achr2P19000_001	Banana	cytosol	15.32	96.1
CDY06287	Canola	cytosol	45.13	96.04
KXG20293	Sorghum	cytosol	88.82	95.97
KXG20294	Sorghum	cytosol	88.82	95.97
KXG20296	Sorghum	cytosol	88.82	95.97
KXG20299	Sorghum	cytosol	88.82	95.97
Zm00001d037877_P014	Maize	cytosol	89.44	95.79
Zm00001d037875_P014	Maize	cytosol	89.44	95.79
Zm00001d036904_P001	Maize	cytosol	88.61	95.75
Zm00001d009870_P008	Maize	cytosol	89.23	95.57
Zm00001d037905_P010	Maize	cytosol	89.23	95.57
Zm00001d037873_P010	Maize	cytosol	89.23	95.57
KRH34904	Soybean	nucleus	88.61	95.54
VIT_06s0004g03240.t01	Wine grape	cytosol	88.41	95.53
PGSC0003DMT400020968	Potato	cytosol	88.41	95.53
Bra031601.1-P	Field mustard	cytosol	39.13	95.45
GSMUA_Achr10P...	Banana	cytosol	55.69	95.39
HORVU4Hr1G056820.1	Barley	plasma membrane	94.0	95.38
CDY67375	Canola	cytosol	54.87	95.32
KRH04781	Soybean	endoplasmic reticulum	88.2	95.3
KRH57863	Soybean	nucleus	88.2	95.3
PGSC0003DMT400050663	Potato	cytosol	88.2	95.3
Solyc11g069700.1.1	Tomato	nucleus	88.2	95.3
Zm00001d009868_P015	Maize	cytosol	88.82	95.12
Solyc06g005060.2.1	Tomato	cytosol	88.2	95.09
PGSC0003DMT400059832	Potato	cytosol	88.2	95.09
PGSC0003DMT400059830	Potato	cytosol	88.2	95.09
PGSC0003DMT400053553	Potato	cytosol	88.2	95.09
PGSC0003DMT400053547	Potato	cytosol	88.2	95.09
Solyc06g009970.2.1	Tomato	extracellular, nucleus, plastid	88.2	95.09
GSMUA_Achr10P...	Banana	cytosol	54.87	94.98
VIT_08s0040g02330.t01	Wine grape	cytosol	87.78	94.85
AT1G07930.1	Thale cress	cytosol	87.99	94.65
AT1G07940.3	Thale cress	cytosol	87.99	94.65
AT1G07920.1	Thale cress	cytosol	87.99	94.65
AT5G60390.2	Thale cress	cytosol	87.99	94.65
CDY06289	Canola	cytosol	50.1	94.53
Solyc06g009960.1.1	Tomato	cytosol	80.12	94.39
Bra031602.1-P	Field mustard	cytosol	87.37	93.99
Bra018669.1-P	Field mustard	cytosol	87.37	93.99
Bra002483.1-P	Field mustard	cytosol	87.37	93.99
CDX88757	Canola	cytosol	77.85	93.77
Bra018242.1-P	Field mustard	cytosol	87.16	93.76
Bra020253.1-P	Field mustard	cytosol	87.16	93.76
CDY09211	Canola	cytosol	83.02	93.69
CDY61938	Canola	cytosol	83.02	93.69
CDY10804	Canola	cytosol	83.02	93.69
CDY34479	Canola	cytosol	83.02	93.69
OQU75582	Sorghum	cytosol	24.22	93.6
Bra031605.1-P	Field mustard	cytosol	82.61	93.44
CDY22710	Canola	cytosol	82.61	93.44
CDY22711	Canola	cytosol	82.61	93.44
VIT_13s0019g03920.t01	Wine grape	cytosol	87.99	93.41
Bra006661.1-P	Field mustard	cytosol	86.54	93.1
Bra020251.1-P	Field mustard	cytosol	79.3	92.96
GSMUA_Achr6P04090_001	Banana	cytosol	37.68	92.39
Zm00001d009887_P001	Maize	cytosol	27.12	89.73
GSMUA_Achr3P17840_001	Banana	cytosol	27.95	88.82
GSMUA_AchrUn_...	Banana	cytosol	38.1	88.04
CDX93604	Canola	cytosol	83.44	87.61
CDX95108	Canola	cytosol, extracellular	87.37	86.65
CDX70032	Canola	cytosol	61.7	86.63
OQU75597	Sorghum	cytosol	31.26	86.29
CDY69678	Canola	cytosol	20.5	86.09
CDY67376	Canola	cytosol	20.5	86.09
CDY06290	Canola	cytosol	20.5	86.09
CDY06288	Canola	cytosol	20.5	86.09
GSMUA_Achr7P15510_001	Banana	cytosol, plasma membrane	72.67	86.03
VIT_06s0004g03220.t01	Wine grape	cytosol	88.41	82.43
GSMUA_Achr10P...	Banana	cytosol, plastid	36.44	81.86
VIT_19s0014g04110.t01	Wine grape	cytosol	20.29	80.99
Bra030707.1-P	Field mustard	cytosol	87.37	71.53
CDY58828	Canola	cytosol	82.61	70.25
GSMUA_Achr6P02020_001	Banana	mitochondrion	49.9	69.65
TraesCS2B01G091600.1	Wheat	cytosol	32.92	29.83
TraesCS5B01G545300.2	Wheat	cytosol	23.6	28.64
TraesCS1B01G431000.1	Wheat	cytosol	23.6	28.5
TraesCS5B01G545200.1	Wheat	mitochondrion	26.09	27.88
TraesCS6B01G238600.1	Wheat	plastid	25.47	26.28
TraesCS2B01G465300.1	Wheat	cytosol	32.71	23.2
TraesCS2B01G591700.6	Wheat	cytosol	31.26	21.21

Protein Annotations

MapMan:17.5.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.300	InterPro:EFTu-like_2	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006412
GO:GO:0006414	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	InterPro:G_TR_CS	InterPro:IPR000795	HAMAP:MF_00118_A	InterPro:P-loop_NTPase
PFAM:PF00009	PFAM:PF03143	PFAM:PF03144	PRINTS:PR00315	ScanProsite:PS00301	PFscan:PS51722
PANTHER:PTHR23115	PANTHER:PTHR23115:SF230	SUPFAM:SSF50447	SUPFAM:SSF50465	SUPFAM:SSF52540	InterPro:TF_GTP-bd_dom
TIGRFAMs:TIGR00483	EnsemblPlantsGene:TraesCS4B01G196800	EnsemblPlants:TraesCS4B01G196800.2	InterPro:Transl_B-barrel_sf	InterPro:Transl_elong_EF1A/Init_IF2_C	InterPro:Transl_elong_EF1A_euk/arc
InterPro:Transl_elong_EFTu/EF1A_C	TIGR:cd01883	TIGR:cd03693	TIGR:cd03705	:	:

Description

No Description!

Coordinates

chr4B:-:423775211..423777438

Molecular Weight (calculated)

53470.2 Da

IEP (calculated)

9.620

GRAVY (calculated)

-0.198

Length

483 amino acids

Sequence
(BLAST)

001: MSLHRFFCRS LVVLPRSSYG FCMICWSWVV YLYPPAMGKE KTHINIVVIG HVDSGKSTTT GHLIYKLGGI DKRVIERFEK EAAEMNKRSF KYAWVLDKLK
101: AERERGITID IALWKFETTK YYCTVIDAPG HRDFIKNMIT GTSQADCAVL IIDSTTGGFE AGISKDGQTR EHALLAFTLG VKQMICCCNK MDATTPKYSK
201: ARYEEIVKEV SSYLKKVGYN PDKVPFVPIS GFEGDNMIER STNLDWYKGP TLLEALDQIN EPKRPSDKPL RLPLQDVYKI GGIGTVPVGR VETGVIKPGM
301: VVTFGPTGLT TEVKSVEMHH ESLLEALPGD NVGFNVKNVA VKDLKRGFVA SNSKDDPAKE AANFTSQVII MNHPGQIGNG YAPVLDCHTS HIAVKFAELV
401: TKIDRRSGKE LEALPKFLKN GDAGIVKMIP TKPMVVETFA TYPPLGRFAV RDMRQTVAVG VIKGVEKKDP TGAKVTKAAI KKK

Best Arabidopsis Sequence Match ( AT1G07930.1 )
(BLAST)

001: MGKEKFHINI VVIGHVDSGK STTTGHLIYK LGGIDKRVIE RFEKEAAEMN KRSFKYAWVL DKLKAERERG ITIDIALWKF ETTKYYCTVI DAPGHRDFIK
101: NMITGTSQAD CAVLIIDSTT GGFEAGISKD GQTREHALLA FTLGVKQMIC CCNKMDATTP KYSKARYDEI IKEVSSYLKK VGYNPDKIPF VPISGFEGDN
201: MIERSTNLDW YKGPTLLEAL DQINEPKRPS DKPLRLPLQD VYKIGGIGTV PVGRVETGMI KPGMVVTFAP TGLTTEVKSV EMHHESLLEA LPGDNVGFNV
301: KNVAVKDLKR GYVASNSKDD PAKGAANFTS QVIIMNHPGQ IGNGYAPVLD CHTSHIAVKF SEILTKIDRR SGKEIEKEPK FLKNGDAGMV KMTPTKPMVV
401: ETFSEYPPLG RFAVRDMRQT VAVGVIKSVD KKDPTGAKVT KAAVKKGAK

Arabidopsis Description

A1Elongation factor 1-alpha 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GTY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.