Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- peroxisome 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G143100.1 | Wheat | plastid | 96.48 | 98.75 |
| TraesCS5A01G144000.1 | Wheat | plastid | 97.86 | 98.61 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 86.83 | 96.92 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 65.54 | 81.21 |
| Os11t0124300-01 | Rice | nucleus, plastid | 80.86 | 81.11 |
| Os12t0122000-01 | Rice | plastid | 81.78 | 80.91 |
| TraesCS4D01G122000.1 | Wheat | plastid | 81.32 | 78.2 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 37.52 | 77.53 |
| Zm00001d052380_P001 | Maize | plastid | 79.17 | 77.4 |
| Zm00001d005029_P001 | Maize | plastid | 77.64 | 74.78 |
| OQU82754 | Sorghum | plastid | 81.32 | 74.68 |
| GSMUA_Achr11P... | Banana | plastid | 54.67 | 62.2 |
| CDX78219 | Canola | nucleus, plastid | 54.52 | 59.04 |
| CDX73496 | Canola | nucleus, plastid | 55.59 | 58.36 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 55.44 | 55.44 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 56.36 | 54.76 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 58.19 | 53.75 |
| TraesCS2D01G208500.1 | Wheat | cytosol | 36.29 | 52.78 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 59.72 | 49.87 |
| Solyc10g074680.1.1 | Tomato | cytosol | 57.73 | 45.64 |
| PGSC0003DMT400043358 | Potato | cytosol | 57.58 | 45.52 |
| KRH40615 | Soybean | nucleus, plastid | 55.59 | 44.11 |
| KRH00551 | Soybean | nucleus, plastid | 56.05 | 43.47 |
| TraesCS1D01G303500.1 | Wheat | peroxisome | 25.73 | 34.43 |
| TraesCS3D01G482600.1 | Wheat | cytosol | 22.97 | 32.97 |
| TraesCS6D01G153000.1 | Wheat | cytosol | 19.45 | 32.15 |
| TraesCS7D01G379200.1 | Wheat | cytosol | 20.37 | 31.29 |
| TraesCS4D01G338800.1 | Wheat | cytoskeleton, cytosol, peroxisome, plastid | 22.05 | 29.45 |
| TraesCS3D01G220100.3 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 23.58 | 28.68 |
| TraesCS6D01G055100.1 | Wheat | cytosol | 13.78 | 28.66 |
| TraesCS1D01G421200.1 | Wheat | cytosol | 22.05 | 28.35 |
| TraesCS2D01G534700.1 | Wheat | cytosol | 13.63 | 28.34 |
| TraesCS3D01G385500.1 | Wheat | cytosol | 22.21 | 27.94 |
| TraesCS3D01G385400.1 | Wheat | cytosol | 21.9 | 27.66 |
| TraesCS2D01G302600.1 | Wheat | cytosol, mitochondrion, nucleus | 20.21 | 27.27 |
| TraesCS2D01G055700.1 | Wheat | extracellular, golgi, mitochondrion, plastid | 12.4 | 25.96 |
| TraesCS4D01G054000.1 | Wheat | cytosol | 21.44 | 25.45 |
| TraesCS4D01G040400.1 | Wheat | cytosol | 23.89 | 25.04 |
| TraesCS7D01G053600.1 | Wheat | plastid | 23.74 | 24.72 |
| TraesCS2D01G095300.1 | Wheat | nucleus | 26.03 | 23.78 |
| TraesCS5D01G139500.1 | Wheat | mitochondrion | 20.21 | 23.61 |
| TraesCS4D01G127800.2 | Wheat | mitochondrion | 17.0 | 23.37 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G148000.1 | EnsemblPlantsGene:TraesCS5D01G148000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | MapMan:26.3.1.5 | : |
Description
No Description!
Coordinates
chr5D:+:234821214..234823749
Molecular Weight (calculated)
69846.0 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.158
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSLLLFP SSSSSAPRSS YSHATASSSS SSHHCHLLPC PPDFLLHLRL LDHQEQEPAA AAMVRKRPAT DMDLPPPRRH VTGDLSDMTA GPPVLSSATA
101: QLPALPSQLL PPFQLQQQQQ VDHMDVAAAA AAPAQAGEAA NTTAFVDGII RDIIGSSGAG VSVAQLIHNV REIIHPCNPG LASLLELRLR SLLASDPAPP
201: QQHQHQQALL PNAPMPMAAL PPPPPDKRRR EEEREPNNPP QSPKPPSAEE TAAAAAAASA AASAAVKERK EGQRRKQRDE EGLHLLTLLL QCAESVNADN
301: LDEAQTALLE IAELATPFGT STQRVAAYFA EAVSARLVSS CLGLYAPLPH ASPAASRLVN GRVAAAFQVF NGISPLVKFS HFTANQAIQE AFEREERVHI
401: IDLDIMQGLQ WPGLFHILAS RPGGPPRVRL TGLGASMDAL EATGKRLSDF ADTLGLPFEF CPVADKAGNL DPEKLGVTRR EAVAVHWLHH SLYDVTGSDS
501: NTLCLIKRLA PKVVTMVEQD LRHTGSFLAR FVEAIHYYSA LFDSLDASYG EDSPERHVVE QQLLSREIRN VLAVGGPSRT GDVKFGCWRD SLARSGFGAA
601: SLAGSAAAQA ALLLGMFPSD GYTLVEENGA LKLGWKDLTL LTASAWRPMH ARA
101: QLPALPSQLL PPFQLQQQQQ VDHMDVAAAA AAPAQAGEAA NTTAFVDGII RDIIGSSGAG VSVAQLIHNV REIIHPCNPG LASLLELRLR SLLASDPAPP
201: QQHQHQQALL PNAPMPMAAL PPPPPDKRRR EEEREPNNPP QSPKPPSAEE TAAAAAAASA AASAAVKERK EGQRRKQRDE EGLHLLTLLL QCAESVNADN
301: LDEAQTALLE IAELATPFGT STQRVAAYFA EAVSARLVSS CLGLYAPLPH ASPAASRLVN GRVAAAFQVF NGISPLVKFS HFTANQAIQE AFEREERVHI
401: IDLDIMQGLQ WPGLFHILAS RPGGPPRVRL TGLGASMDAL EATGKRLSDF ADTLGLPFEF CPVADKAGNL DPEKLGVTRR EAVAVHWLHH SLYDVTGSDS
501: NTLCLIKRLA PKVVTMVEQD LRHTGSFLAR FVEAIHYYSA LFDSLDASYG EDSPERHVVE QQLLSREIRN VLAVGGPSRT GDVKFGCWRD SLARSGFGAA
601: SLAGSAAAQA ALLLGMFPSD GYTLVEENGA LKLGWKDLTL LTASAWRPMH ARA
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.