Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G082150.1 | Barley | cytosol | 57.58 | 98.26 |
| TraesCS3B01G417500.1 | Wheat | golgi | 95.23 | 96.71 |
| TraesCS3A01G385300.1 | Wheat | cytosol | 95.06 | 96.54 |
| HORVU3Hr1G082110.2 | Barley | plastid | 93.36 | 84.96 |
| Os01t0874700-01 | Rice | plasma membrane | 83.13 | 79.61 |
| KXG33790 | Sorghum | cytosol | 78.53 | 78.14 |
| Zm00001d012254_P003 | Maize | mitochondrion | 73.25 | 77.34 |
| Zm00001d042664_P001 | Maize | plasma membrane | 74.62 | 76.71 |
| EES10230 | Sorghum | cytosol | 64.91 | 74.41 |
| TraesCS1D01G268600.1 | Wheat | golgi | 71.04 | 68.36 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 12.61 | 64.91 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 55.03 | 64.6 |
| KRG99105 | Soybean | cytosol | 15.33 | 60.81 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 52.81 | 58.94 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 58.09 | 58.79 |
| Bra000675.1-P | Field mustard | cytosol | 30.49 | 57.74 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 54.17 | 57.3 |
| CDX90715 | Canola | cytosol | 29.81 | 56.45 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 39.01 | 54.01 |
| VIT_07s0031g03220.t01 | Wine grape | cytosol | 45.49 | 51.15 |
| KRH54012 | Soybean | nucleus | 48.38 | 50.99 |
| KRH63933 | Soybean | plasma membrane | 48.04 | 50.63 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 52.3 | 49.12 |
| KRH59683 | Soybean | cytosol | 44.97 | 48.98 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 40.89 | 48.98 |
| PGSC0003DMT400065886 | Potato | cytosol | 40.89 | 48.88 |
| VIT_18s0041g00430.t01 | Wine grape | cytosol | 50.43 | 48.84 |
| CDY58916 | Canola | cytosol | 11.41 | 48.55 |
| CDY50441 | Canola | plasma membrane | 39.52 | 47.84 |
| AT1G72160.1 | Thale cress | nucleus | 39.69 | 47.55 |
| CDX82180 | Canola | nucleus | 39.35 | 47.24 |
| CDY03654 | Canola | nucleus | 39.35 | 47.24 |
| Bra008013.1-P | Field mustard | nucleus | 39.86 | 47.18 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 32.2 | 47.01 |
| KRH23751 | Soybean | endoplasmic reticulum | 48.38 | 46.86 |
| KRH44929 | Soybean | endoplasmic reticulum | 45.66 | 46.53 |
| Bra003891.1-P | Field mustard | cytosol | 39.86 | 46.43 |
| KRH41016 | Soybean | endoplasmic reticulum | 45.32 | 46.26 |
| PGSC0003DMT400013297 | Potato | cytosol | 44.97 | 45.75 |
| Solyc06g064940.2.1 | Tomato | nucleus | 45.14 | 45.69 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 44.97 | 45.36 |
| CDX68278 | Canola | cytosol | 33.73 | 45.1 |
| Solyc11g051160.1.1 | Tomato | extracellular, plastid | 45.14 | 44.99 |
| Bra008012.1-P | Field mustard | cytosol | 41.23 | 43.06 |
| TraesCS1D01G202700.1 | Wheat | plastid | 31.01 | 43.03 |
| CDY03655 | Canola | cytosol | 41.4 | 43.01 |
| CDY71835 | Canola | cytosol | 20.95 | 43.01 |
| Bra016084.1-P | Field mustard | cytosol | 40.55 | 42.65 |
| CDX96377 | Canola | cytosol | 40.37 | 42.63 |
| CDX68279 | Canola | cytosol | 38.33 | 42.37 |
| CDX82182 | Canola | cytosol | 40.37 | 41.22 |
| Bra003892.1-P | Field mustard | cytosol | 36.46 | 41.0 |
| AT1G72150.1 | Thale cress | cytosol | 39.69 | 40.66 |
| CDY71842 | Canola | cytosol | 33.05 | 40.33 |
| TraesCS7D01G454600.1 | Wheat | cytosol | 35.43 | 36.36 |
| AT1G22530.1 | Thale cress | cytosol | 41.91 | 36.02 |
| CDY21368 | Canola | cytosol | 37.99 | 34.2 |
| Bra040854.1-P | Field mustard | cytosol | 40.89 | 33.99 |
| AT4G09160.1 | Thale cress | cytosol | 37.65 | 33.08 |
| CDY66581 | Canola | cytosol | 35.26 | 33.07 |
| CDY05051 | Canola | nucleus | 37.82 | 31.99 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf |
| InterPro:GOLD_dom | InterPro:GOLD_dom_sf | InterPro:IPR001251 | InterPro:IPR009038 | InterPro:IPR036865 | PFAM:PF00650 |
| PFAM:PF03765 | PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF143 | SMART:SM00516 |
| SMART:SM01100 | SUPFAM:SSF101576 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | EnsemblPlantsGene:TraesCS3D01G378300 | EnsemblPlants:TraesCS3D01G378300.1 |
| TIGR:cd00170 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:495484755..495487157
Molecular Weight (calculated)
63734.0 Da
IEP (calculated)
4.404
GRAVY (calculated)
-0.423
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEPQPQAA AAPAAAATEV VVAEKAPAEV EKKAEEPAAE AEAEETAAVA DDGGAVEATG SFKEESNLVA DLPDPEKKAL DEFKELIVAA LAAGEFNLPP
101: PPPPPKAKTE AAAEETKTEA PAKEEAKTEE PAKAEEPAKE EPKAEEPAKA EAAAAEPAAE EPKAVVAAEA AAEEPAKEEP KAEEAKPAEP KKEEEAVVVA
201: EEGTKTAEPV EEAAAAATTT EQAAAPEPEA EAAAPEPVFI WGVPLVGDDE RTDAVLLKFL RAREFKVKEA MAMLRSAVLW RKRFGIESLL EADLAFPELE
301: KVVFYRGADR EGHPVCYNVY GEFQDKEVYE KAFGDEEKRE RFLKWRIQLL ERGILSQLDF APSGICSMVQ VTDLKNSPPM LGKHRAVTRQ AVALLQDNYP
401: EFIAKKVFIN VPWWYLAANK MMSPFLTQRT KSKFVFASQA KSPETLFRYI APEQVPVQFG GLFKEDDPDF TTSDSVTELT IKASSKETIE IPVTENSTIV
501: WELRVLGWEV SHGAEFTPDA EGAYTVIVQK TRKVPANEEP IMKGSFKAGE AGKIVLTVSN AASKKKKLLY RSKVKCSTGE SVEADIP
101: PPPPPKAKTE AAAEETKTEA PAKEEAKTEE PAKAEEPAKE EPKAEEPAKA EAAAAEPAAE EPKAVVAAEA AAEEPAKEEP KAEEAKPAEP KKEEEAVVVA
201: EEGTKTAEPV EEAAAAATTT EQAAAPEPEA EAAAPEPVFI WGVPLVGDDE RTDAVLLKFL RAREFKVKEA MAMLRSAVLW RKRFGIESLL EADLAFPELE
301: KVVFYRGADR EGHPVCYNVY GEFQDKEVYE KAFGDEEKRE RFLKWRIQLL ERGILSQLDF APSGICSMVQ VTDLKNSPPM LGKHRAVTRQ AVALLQDNYP
401: EFIAKKVFIN VPWWYLAANK MMSPFLTQRT KSKFVFASQA KSPETLFRYI APEQVPVQFG GLFKEDDPDF TTSDSVTELT IKASSKETIE IPVTENSTIV
501: WELRVLGWEV SHGAEFTPDA EGAYTVIVQK TRKVPANEEP IMKGSFKAGE AGKIVLTVSN AASKKKKLLY RSKVKCSTGE SVEADIP
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
Arabidopsis Description
PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.