Factsheet for Solyc11g027880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
endoplasmic reticulum: 29145071

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g074680.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Solyc10g074680.1.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065886	Potato	cytosol	97.14	96.94
VIT_09s0002g09040.t01	Wine grape	cytosol	20.41	87.72
Bra000675.1-P	Field mustard	cytosol	46.53	73.55
CDX90715	Canola	cytosol	46.12	72.9
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.16	67.22
CDX82180	Canola	nucleus	62.24	62.37
CDY03654	Canola	nucleus	62.04	62.17
CDY50441	Canola	plasma membrane	61.02	61.65
Bra008013.1-P	Field mustard	nucleus	62.04	61.29
HORVU3Hr1G082150.1	Barley	cytosol	42.86	61.05
AT1G72160.1	Thale cress	nucleus	61.02	61.02
GSMUA_Achr2P08100_001	Banana	cytosol	49.39	60.96
Bra003891.1-P	Field mustard	cytosol	60.82	59.13
CDX68278	Canola	cytosol	52.24	58.31
Zm00001d005249_P001	Maize	mitochondrion	32.86	58.12
Zm00001d043169_P001	Maize	cytosol	24.29	56.4
Zm00001d005304_P001	Maize	mitochondrion	30.82	55.51
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	51.63	55.48
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.84	54.21
VIT_05s0029g01570.t01	Wine grape	cytosol	42.86	52.24
GSMUA_Achr7P23220_001	Banana	cytosol	53.27	52.2
VIT_18s0041g00420.t01	Wine grape	cytosol	61.63	51.89
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	51.43	48.46
GSMUA_Achr3P22170_001	Banana	cytosol	51.22	47.72
GSMUA_Achr6P18780_001	Banana	cytosol	54.29	45.86
Solyc06g064940.2.1	Tomato	nucleus	53.67	45.34
Solyc09g015080.2.1	Tomato	cytosol, plastid	39.18	45.28
AT4G09160.1	Thale cress	cytosol	60.61	44.46
Zm00001d012254_P003	Maize	mitochondrion	50.41	44.42
Solyc02g070210.2.1	Tomato	cytosol	42.04	43.74
Solyc11g051160.1.1	Tomato	extracellular, plastid	52.45	43.63
GSMUA_Achr5P25970_001	Banana	cytosol	48.98	43.24
EES10230	Sorghum	cytosol	44.29	42.38
Zm00001d042664_P001	Maize	plasma membrane	49.39	42.38
KXG33790	Sorghum	cytosol	50.2	41.69
CDY05051	Canola	nucleus	58.98	41.64
TraesCS3B01G417500.1	Wheat	golgi	48.98	41.52
TraesCS3A01G385300.1	Wheat	cytosol	48.78	41.35
TraesCS3D01G378300.1	Wheat	cytosol	48.98	40.89
Os05t0429400-01	Rice	plasma membrane	48.57	40.68
Os01t0874700-01	Rice	plasma membrane	50.61	40.46
TraesCS1D01G268600.1	Wheat	golgi	50.0	40.16
TraesCS1B01G279200.1	Wheat	cytosol	49.8	40.0
TraesCS1A01G268500.1	Wheat	cytosol	49.8	40.0
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	49.8	39.04
Zm00001d038262_P001	Maize	plasma membrane	49.39	39.03
OQU78068	Sorghum	cytosol	41.84	38.97
HORVU3Hr1G082110.2	Barley	plastid	48.98	37.21
HORVU1Hr1G075150.4	Barley	plasma membrane	50.2	37.05
Zm00001d010205_P002	Maize	cytosol	38.57	35.06
Solyc09g025230.2.1	Tomato	cytosol	32.04	34.89

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:K4D7D1	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc11g027880.1	EnsemblPlants:Solyc11g027880.1.1
UniParc:UPI0002769929	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:19100991..19104060

Molecular Weight (calculated)

56092.7 Da

IEP (calculated)

4.781

GRAVY (calculated)

-0.470

Length

490 amino acids

Sequence
(BLAST)

001: MAETEHTHQP PLPAEEDILS PPSPEPLLAS VEVESVVEAV EEHHSVVTVV EKEGPLTELP QEPTKTLAEA QQVSITLPER EPTESDKSKP VEDKKIPQSL
101: ISFKEESNKV SDLSDSEVKA LEDFKFLVQE AVKDQTFTTG TTDLPQEVSI WGVPLLKDDR SDVILLKFLR ARDFKVKESF AMLKNTILWR KEFNIEELVD
201: ENLGDDLEKV VFMDGHDKEG HPVCYNVYGE FQNKELYNKT FGDEEKRNKF LRWRIQFLER SIRKLDFSPG GINTIFQVSD LKNSPGPGKR ELRIATRQAL
301: QLLQDNYPEF VAKQVFINVP WWYLAFYTMI SPFMTQRTKS KFVFAGPSKT AETLYKYITP EQVPVQYGGL SVDYCECNPE FTSNDPVTEI IVKPATKQTV
401: EIIVNEKCII VWELRVLGWE VTYSAEYVPN TDSGYTVNIQ KPRKMTTADE PVVSSSFKIV ELGKILLTID NPTSKKKKLL YRFKDKPYSD

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.