Factsheet for GSMUA_Achr2P08100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	21.16	73.68
KRG99105	Soybean	cytosol	26.2	70.27
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	78.84	68.64
Bra000675.1-P	Field mustard	cytosol	49.87	63.87
CDX90715	Canola	cytosol	49.37	63.23
CDY58916	Canola	cytosol	20.4	58.7
GSMUA_Achr7P23220_001	Banana	cytosol	73.55	58.4
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	72.04	55.0
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.68	54.01
GSMUA_Achr6P18780_001	Banana	cytosol	78.09	53.45
VIT_07s0031g03220.t01	Wine grape	cytosol	68.77	52.3
GSMUA_Achr5P25970_001	Banana	cytosol	72.29	51.71
GSMUA_Achr3P22170_001	Banana	cytosol	67.0	50.57
KRH59683	Soybean	cytosol	67.25	49.54
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	60.96	49.39
PGSC0003DMT400065886	Potato	cytosol	60.96	49.29
VIT_05s0029g01570.t01	Wine grape	cytosol	49.87	49.25
CDX82180	Canola	nucleus	58.69	47.65
KRH63933	Soybean	plasma membrane	66.75	47.58
CDY03654	Canola	nucleus	58.44	47.44
CDY50441	Canola	plasma membrane	57.93	47.42
AT1G72160.1	Thale cress	nucleus	58.19	47.14
KRH54012	Soybean	nucleus	66.0	47.04
Bra008013.1-P	Field mustard	nucleus	58.44	46.77
KRH41016	Soybean	endoplasmic reticulum	66.75	46.09
Bra003891.1-P	Field mustard	cytosol	58.19	45.83
VIT_18s0041g00430.t01	Wine grape	cytosol	68.51	44.88
PGSC0003DMT400013297	Potato	cytosol	63.98	44.02
CDX68278	Canola	cytosol	48.61	43.96
KRH44929	Soybean	endoplasmic reticulum	63.48	43.75
Solyc11g051160.1.1	Tomato	extracellular, plastid	64.48	43.46
Solyc06g064940.2.1	Tomato	nucleus	62.97	43.1
KRH23751	Soybean	endoplasmic reticulum	65.74	43.07
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	67.76	43.04
VIT_18s0041g00420.t01	Wine grape	cytosol	61.71	42.1
CDX68279	Canola	cytosol	53.9	40.3
GSMUA_Achr2P18920_001	Banana	plastid	42.82	40.28
GSMUA_Achr5P07450_001	Banana	plastid	39.29	39.39
GSMUA_Achr3P09950_001	Banana	plastid	42.07	39.39
Bra008012.1-P	Field mustard	cytosol	55.67	39.32
CDX96377	Canola	cytosol	54.91	39.21
CDY03655	Canola	cytosol	55.67	39.12
Bra016084.1-P	Field mustard	cytosol	54.91	39.07
GSMUA_Achr9P17890_001	Banana	cytosol	38.54	38.83
CDX82182	Canola	cytosol	55.67	38.43
AT1G72150.1	Thale cress	cytosol	54.91	38.05
Bra003892.1-P	Field mustard	cytosol	49.87	37.93
GSMUA_Achr1P05640_001	Banana	cytosol	38.29	36.63
GSMUA_Achr9P30580_001	Banana	cytosol	49.87	36.4
CDY71835	Canola	cytosol	26.2	36.36
CDY71842	Canola	cytosol	41.81	34.51
AT4G09160.1	Thale cress	cytosol	56.68	33.68
CDY05051	Canola	nucleus	56.93	32.56
AT1G22530.1	Thale cress	cytosol	54.66	31.77
CDY21368	Canola	cytosol	50.88	30.98
Bra040854.1-P	Field mustard	cytosol	54.91	30.88
CDY66581	Canola	cytosol	45.09	28.59

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSMUA_Achr2G08100_001	EnsemblPlants:GSMUA_Achr2P08100_001	EnsemblPlants:GSMUA_Achr2T08100_001	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	UniProt:M0S651	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002948759	SEG:seg	:

Description

Patellin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr2G08100_001]

Coordinates

chr2:-:12230794..12232732

Molecular Weight (calculated)

44639.5 Da

IEP (calculated)

4.996

GRAVY (calculated)

-0.270

Length

397 amino acids

Sequence
(BLAST)

001: MAEESAPPAK EEEAEKPAPA SASPTAEKAI VVDDDGAKTV EAIEETVVPP TPPAPEEVFI WGVPLLGDER SDTVLLKFLR ARDFKVKEAM AMLKNAVLWR
101: KEFGIEALLE EDLGVLEMEK VVFMHGVDKE GHPVCYNVYG QFQNKELYAA AFADEEKRKR FLRWRIQYLE KGIRNLLDFK PEGVSTMVQV TDLKNSIGLA
201: KKELRQALDL LQDNYPEFAA KQVFINVPWW YLAFNRMISP FFTQRTKSKF VFAGPSKSAE TLFKYIAPEQ VPVQFGGLSK ENDTDFSTAD AVIETTIKPS
301: TKQAIEIPVA ESCILVWELR VLGWDVNYGA EFVPSAEDGY TVIVQKSRKM VVTDEPVVKD SFKIGEAGKV VLTVDNTTSK KKKLLYRYKT KSSSDSI

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.