Factsheet for PGSC0003DMT400013297

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g064940.2.1	Tomato	nucleus	94.8	94.31
KRG99105	Soybean	cytosol	16.98	66.22
GSMUA_Achr2P08100_001	Banana	cytosol	44.02	63.98
HORVU3Hr1G082150.1	Barley	cytosol	35.88	60.17
Zm00001d005249_P001	Maize	mitochondrion	27.73	57.76
Zm00001d043169_P001	Maize	cytosol	20.8	56.87
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	44.37	56.14
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.4	56.07
Zm00001d005304_P001	Maize	mitochondrion	26.34	55.88
GSMUA_Achr7P23220_001	Banana	cytosol	48.01	55.4
PGSC0003DMT400065886	Potato	cytosol	45.75	53.77
CDY58916	Canola	cytosol	12.13	50.72
VIT_18s0041g00430.t01	Wine grape	cytosol	53.21	50.66
GSMUA_Achr6P18780_001	Banana	cytosol	50.61	50.34
CDY71835	Canola	cytosol	24.78	50.0
KRH44929	Soybean	endoplasmic reticulum	49.22	49.31
GSMUA_Achr3P22170_001	Banana	cytosol	44.89	49.24
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	44.37	49.23
Zm00001d012254_P003	Maize	mitochondrion	46.79	48.56
KRH23751	Soybean	endoplasmic reticulum	50.95	48.51
GSMUA_Achr5P25970_001	Banana	cytosol	46.1	47.93
Zm00001d042664_P001	Maize	plasma membrane	46.97	47.46
CDX68279	Canola	cytosol	43.67	47.46
CDX96377	Canola	cytosol	45.58	47.3
KXG33790	Sorghum	cytosol	48.35	47.29
Bra016084.1-P	Field mustard	cytosol	45.58	47.13
EES10230	Sorghum	cytosol	41.42	46.68
TraesCS3A01G385300.1	Wheat	cytosol	46.45	46.37
Bra008012.1-P	Field mustard	cytosol	45.06	46.26
CDY03655	Canola	cytosol	45.23	46.19
TraesCS3B01G417500.1	Wheat	golgi	46.27	46.19
AT1G72150.1	Thale cress	cytosol	45.58	45.9
Os05t0429400-01	Rice	plasma membrane	46.27	45.64
TraesCS3D01G378300.1	Wheat	cytosol	45.75	44.97
Bra003892.1-P	Field mustard	cytosol	40.55	44.83
Os01t0874700-01	Rice	plasma membrane	47.49	44.7
PGSC0003DMT400054383	Potato	cytosol	36.4	44.68
CDX82182	Canola	cytosol	44.37	44.52
TraesCS1B01G279200.1	Wheat	cytosol	46.97	44.43
PGSC0003DMT400030364	Potato	plastid	32.76	44.37
CDY71842	Canola	cytosol	36.92	44.28
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	47.83	44.16
TraesCS1D01G268600.1	Wheat	golgi	46.62	44.1
Zm00001d038262_P001	Maize	plasma membrane	47.31	44.03
TraesCS1A01G268500.1	Wheat	cytosol	46.45	43.93
OQU78068	Sorghum	cytosol	39.17	42.97
HORVU3Hr1G082110.2	Barley	plastid	46.1	41.24
HORVU1Hr1G075150.4	Barley	plasma membrane	47.31	41.11
Zm00001d010205_P002	Maize	cytosol	37.95	40.63
AT1G22530.1	Thale cress	cytosol	46.62	39.39
Bra040854.1-P	Field mustard	cytosol	46.1	37.68
CDY21368	Canola	cytosol	42.46	37.58
CDY66581	Canola	cytosol	40.38	37.22
PGSC0003DMT400026646	Potato	cytosol	25.48	33.03

Protein Annotations

EntrezGene:102597890	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865
UniProt:M1A2M6	PFAM:PF00650	PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG400005189	PGSC:PGSC0003DMG400005189	EnsemblPlants:PGSC0003DMT400013297
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000295A501	RefSeq:XP_006356506.1	SEG:seg

Description

Patellin 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005189]

Coordinates

chr6:+:47171971..47174654

Molecular Weight (calculated)

64395.7 Da

IEP (calculated)

4.424

GRAVY (calculated)

-0.563

Length

577 amino acids

Sequence
(BLAST)

001: MAEETKKIAE ETTPEVVVSD VTVRETPQPE PENVPESPEK VAPVTGESKV EDEKEKELVA ESNSFKEESN KVEELPNPEQ KALAEFKQMV QEALNKHEFT
101: APPPPPPAKE EDEKKAAVSA DAPAEAPEAE TAAAAAPEPV IEAESEPVAE KKVETEELEK TEEKVTPPET EATPAPAAET PSATEKVEAV EEIKETIVEV
201: PAAVAVVAST EEPPAAEAEE PKTEQTLPPP PPEEVTIWGI PLLADERSDV ILLKFLRARD FKVKEAFAML KSVVAWRKEF KIDELLDEKE LGQGLEKVVY
301: NHGVDKEGHP VCYNAFGEFQ DKELYQNTFA DDKEKLTKFL RWRIQFMEKS IRNLDFSPDG INTFVQVLDL KNSPGLFFYK KELRQATNRA LLLLQDNYPE
401: FVAKQVFINV PWWYPAYYRM INASFTTRTK SKFVFAGPSR SAETLFKYIA PEQVPAQYGG LSKEGEQEFI TAEPATEEII KPASKQTIEF PVTEKCTLVW
501: EARVTGWDVS YGAEFVPSAE GGYTILIEKS RKVGANESVI STSYKASEAG KVVITIDNQT SKKKKLVYRS KNKLSDC

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.