Factsheet for Os01t0874700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 18260611

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os11t0124300-01
Os12t0122000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Os11t0124300-01	AT3G54220.1	19228333
AT1G72160.1	Os12t0122000-01	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G082150.1	Barley	cytosol	51.71	92.15
TraesCS3A01G385300.1	Wheat	cytosol	79.93	84.78
TraesCS3B01G417500.1	Wheat	golgi	79.61	84.43
Zm00001d042664_P001	Maize	plasma membrane	78.47	84.24
Zm00001d012254_P003	Maize	mitochondrion	75.69	83.45
TraesCS3D01G378300.1	Wheat	cytosol	79.61	83.13
KXG33790	Sorghum	cytosol	79.93	83.05
EES10230	Sorghum	cytosol	66.56	79.69
Os05t0429400-01	Rice	plasma membrane	73.25	76.75
HORVU3Hr1G082110.2	Barley	plastid	78.47	74.57
GSMUA_Achr7P23220_001	Banana	cytosol	53.83	66.0
VIT_09s0002g09040.t01	Wine grape	cytosol	12.07	64.91
KRG99105	Soybean	cytosol	15.17	62.84
GSMUA_Achr6P18780_001	Banana	cytosol	57.75	61.03
Bra000675.1-P	Field mustard	cytosol	30.34	60.0
GSMUA_Achr3P22170_001	Banana	cytosol	51.22	59.7
CDX90715	Canola	cytosol	29.69	58.71
GSMUA_Achr5P25970_001	Banana	cytosol	53.02	58.56
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	38.34	55.42
VIT_07s0031g03220.t01	Wine grape	cytosol	46.33	54.41
KRH54012	Soybean	nucleus	48.12	52.96
KRH63933	Soybean	plasma membrane	47.96	52.78
CDY58916	Canola	cytosol	11.75	52.17
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	52.85	51.84
VIT_18s0041g00430.t01	Wine grape	cytosol	50.41	50.99
KRH59683	Soybean	cytosol	44.7	50.83
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	40.46	50.61
PGSC0003DMT400065886	Potato	cytosol	40.46	50.51
CDY50441	Canola	plasma membrane	39.15	49.48
KRH44929	Soybean	endoplasmic reticulum	46.33	49.31
KRH23751	Soybean	endoplasmic reticulum	48.61	49.17
CDY03654	Canola	nucleus	38.99	48.88
CDX82180	Canola	nucleus	38.99	48.88
Bra008013.1-P	Field mustard	nucleus	39.48	48.79
Bra003891.1-P	Field mustard	cytosol	39.97	48.61
KRH41016	Soybean	endoplasmic reticulum	45.51	48.52
AT1G72160.1	Thale cress	nucleus	38.66	48.37
Solyc06g064940.2.1	Tomato	nucleus	45.02	47.59
PGSC0003DMT400013297	Potato	cytosol	44.7	47.49
CDX68278	Canola	cytosol	33.61	46.92
Os05t0345175-01	Rice	cytosol	6.04	46.84
VIT_05s0029g01570.t01	Wine grape	cytosol	30.67	46.77
Solyc11g051160.1.1	Tomato	extracellular, plastid	44.7	46.52
VIT_18s0041g00420.t01	Wine grape	cytosol	43.23	45.53
Bra008012.1-P	Field mustard	cytosol	41.27	45.02
CDX68279	Canola	cytosol	38.83	44.82
Bra016084.1-P	Field mustard	cytosol	40.62	44.62
CDX96377	Canola	cytosol	40.46	44.6
CDY03655	Canola	cytosol	41.11	44.6
CDX82182	Canola	cytosol	40.46	43.13
Bra003892.1-P	Field mustard	cytosol	36.7	43.1
AT1G72150.1	Thale cress	cytosol	40.13	42.93
CDY71835	Canola	cytosol	19.9	42.66
CDY71842	Canola	cytosol	32.63	41.58
Os05t0345100-00	Rice	plastid	20.07	39.42
Os06t0671800-01	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	22.19	37.47
AT1G22530.1	Thale cress	cytosol	41.27	37.04
CDY21368	Canola	cytosol	38.34	36.04
Bra040854.1-P	Field mustard	cytosol	41.44	35.98
CDY66581	Canola	cytosol	36.05	35.3
AT4G09160.1	Thale cress	cytosol	37.85	34.73
CDY05051	Canola	nucleus	37.85	33.43

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	EntrezGene:4324771	EMBL:AK073077	ProteinID:BAB86220.1	ProteinID:BAB92436.1
ProteinID:BAF06872.1	ProteinID:BAS75488.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865
EnsemblPlantsGene:Os01g0874700	EnsemblPlants:Os01t0874700-01	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866
PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	UniProt:Q8RYZ1	SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000009CEE6	RefSeq:XP_015621303.1	SEG:seg	:

Description

GOLD domain containing protein. (Os01t0874700-01);GOLD domain containing protein. (Os01t0874700-02);Similar to patellin-1. (Os01t0874700-03)

Coordinates

chr1:+:37948867..37951936

Molecular Weight (calculated)

66461.1 Da

IEP (calculated)

4.329

GRAVY (calculated)

-0.453

Length

613 amino acids

Sequence
(BLAST)

001: MAEEPQPEAA PAAVAATTEV AVAEKAPVEA EKEKKVEEET PAVEAEAKEE KKDEAAAAAA AGGDEAGAIE GTGSFKEESN LVADLPDPEK KALDEFKQLI
101: AAALAACEFN LPPPPPPPKA KVEAAVEETK AEETKAEEEP KAEEPAKEEE PKAEVAAAAA APPEAGTEEP KAEASSEEAK TEEPKAEAAA DEPAKEESKA
201: EAAPAEEAKP AEPEPEEKTV VVTEEEAATK TVEAIEETVV PAAAAPAAAA TEEAAAPEPE VQAAAAPEPV LIWGVPLVGD DERTDTVLLK FLRAREFKVK
301: EAMAMLRSAV LWRKRFGIES LLDADLALPE LDSVVFYRGA DREGHPVCYN VYGEFQDKDL YEKAFGDEEK RERFLKWRIQ LLERGILSQL DFSPSGICSM
401: VQVTDLKNSP PMLGKHRAVT RQAVALLQDN YPEFIAKKVF INVPWWYLAA NKMMSPFLTQ RTKSKFIFAS PAKSAETLFR YIAPEQVPVQ FGGLFKEDDP
501: EFTTSDAVTE LTIKPSSKET VEIPVTENST IGWELRVLGW EVSYGAEFTP DAEGGYTVIV QKTRKVPANE EPIMKGSFKV GEPGKIVLTI NNPASKKKKL
601: LYRSKVKSTS ESV

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.