Factsheet for Bra003891.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68278	Canola	cytosol	83.93	96.36
CDY50441	Canola	plasma membrane	90.28	93.81
Bra008013.1-P	Field mustard	nucleus	86.9	88.31
AT1G72160.1	Thale cress	nucleus	81.35	83.67
VIT_09s0002g09040.t01	Wine grape	cytosol	18.25	80.7
Bra000675.1-P	Field mustard	cytosol	45.83	74.52
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	53.57	63.68
PGSC0003DMT400065886	Potato	cytosol	59.52	61.1
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	59.13	60.82
GSMUA_Achr2P08100_001	Banana	cytosol	45.83	58.19
HORVU3Hr1G082150.1	Barley	cytosol	38.29	56.1
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	50.4	55.7
Zm00001d005249_P001	Maize	mitochondrion	30.16	54.87
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.31	53.27
Zm00001d043169_P001	Maize	cytosol	22.02	52.61
Zm00001d005304_P001	Maize	mitochondrion	27.98	51.84
GSMUA_Achr7P23220_001	Banana	cytosol	50.79	51.2
VIT_05s0029g01570.t01	Wine grape	cytosol	39.48	49.5
VIT_18s0041g00420.t01	Wine grape	cytosol	56.55	48.97
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	48.02	46.54
GSMUA_Achr3P22170_001	Banana	cytosol	48.41	46.39
Bra036782.1-P	Field mustard	cytosol, plastid	36.31	44.42
GSMUA_Achr5P25970_001	Banana	cytosol	48.81	44.32
GSMUA_Achr6P18780_001	Banana	cytosol	50.4	43.79
Zm00001d012254_P003	Maize	mitochondrion	47.62	43.17
Zm00001d042664_P001	Maize	plasma membrane	47.62	42.03
EES10230	Sorghum	cytosol	41.27	40.62
KXG33790	Sorghum	cytosol	47.42	40.51
TraesCS3B01G417500.1	Wheat	golgi	46.23	40.31
TraesCS3A01G385300.1	Wheat	cytosol	46.03	40.14
Os01t0874700-01	Rice	plasma membrane	48.61	39.97
TraesCS3D01G378300.1	Wheat	cytosol	46.43	39.86
Os05t0429400-01	Rice	plasma membrane	46.23	39.83
Bra012843.1-P	Field mustard	cytosol	34.72	39.59
Zm00001d038262_P001	Maize	plasma membrane	47.82	38.87
TraesCS1B01G279200.1	Wheat	cytosol	47.02	38.85
TraesCS1A01G268500.1	Wheat	cytosol	47.02	38.85
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	48.02	38.72
TraesCS1D01G268600.1	Wheat	golgi	46.63	38.52
Bra023118.1-P	Field mustard	cytosol	37.3	38.29
Bra016084.1-P	Field mustard	cytosol	41.87	37.81
Bra008012.1-P	Field mustard	cytosol	42.06	37.72
Bra003892.1-P	Field mustard	cytosol	38.89	37.55
OQU78068	Sorghum	cytosol	38.89	37.26
Zm00001d010205_P002	Maize	cytosol	38.89	36.36
HORVU3Hr1G082110.2	Barley	plastid	46.43	36.28
HORVU1Hr1G075150.4	Barley	plasma membrane	47.62	36.14
Bra026229.1-P	Field mustard	cytosol	38.1	36.09
Bra040854.1-P	Field mustard	cytosol	41.47	29.6

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	EnsemblPlantsGene:Bra003891	EnsemblPlants:Bra003891.1	EnsemblPlants:Bra003891.1-P	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	UniProt:M4CI58	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0002541812	SEG:seg	:	:	:

Description

AT1G72160 (E=6e-186) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein

Coordinates

chrA07:+:15591824..15593596

Molecular Weight (calculated)

57255.6 Da

IEP (calculated)

4.717

GRAVY (calculated)

-0.568

Length

504 amino acids

Sequence
(BLAST)

001: MAEESITTTL PTPELTTPEE SKPTLEFSAR ETETAVTTST PETETTAEKP EVAAPKVTET AVTETAAAQL EVTPEEHQQP KVTETETAST ETSQKEEAAE
101: DETTRIPQNL GSFKEESSLL SDLSDSEKKS LNELKHLVRE ALDNHQFGSV PKPEEDAANA PEEVTIWGVP LLEDDRSDVV LLKFLRARDF KVKDSLTMLK
201: NTIKWRRDFK IDELVDEDLV DDLDKVVFMH GHDREGHPVC YNVYGEFQNK ELYSKTFSDE EKRKHFLRTR IQFLERSIRK MDFSSGGVST IFQINDMKNS
301: PGLGKKELRS ATKQAVQLLQ DNYPEFVFKQ AFINVPWWYL VFYTVIGPFM TPRSKSKLVF AGPSRSAETL FKYISPEQVP VQYGGLSVDP CDCNPDFSLD
401: DPASEVTVKP GTKQTVEIII YEKCEIVWEI RVIGWEVSYK AEFVPEEKDA YTVVVQKPRK MKPADEPVLT QSFKVNELGK VLLTVDNPTS KKKKLVYRFN
501: VKPL

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.