Factsheet for PGSC0003DMT400065886

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	PGSC0003DMT400043358	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	96.94	97.14
VIT_09s0002g09040.t01	Wine grape	cytosol	20.37	87.72
Bra000675.1-P	Field mustard	cytosol	46.44	73.55
CDX90715	Canola	cytosol	46.03	72.9
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	58.45	67.69
CDX82180	Canola	nucleus	62.32	62.58
CDY03654	Canola	nucleus	62.12	62.37
CDY50441	Canola	plasma membrane	61.51	62.27
Bra008013.1-P	Field mustard	nucleus	62.12	61.49
AT1G72160.1	Thale cress	nucleus	61.3	61.43
HORVU3Hr1G082150.1	Barley	cytosol	42.77	61.05
GSMUA_Achr2P08100_001	Banana	cytosol	49.29	60.96
Bra003891.1-P	Field mustard	cytosol	61.1	59.52
CDX68278	Canola	cytosol	52.55	58.77
Zm00001d005249_P001	Maize	mitochondrion	32.79	58.12
Zm00001d043169_P001	Maize	cytosol	24.24	56.4
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	51.93	55.92
Zm00001d005304_P001	Maize	mitochondrion	30.75	55.51
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.81	54.21
VIT_18s0041g00420.t01	Wine grape	cytosol	62.53	52.75
GSMUA_Achr7P23220_001	Banana	cytosol	53.36	52.4
VIT_05s0029g01570.t01	Wine grape	cytosol	42.77	52.24
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	51.53	48.65
GSMUA_Achr3P22170_001	Banana	cytosol	51.53	48.1
PGSC0003DMT400013297	Potato	cytosol	53.77	45.75
GSMUA_Achr6P18780_001	Banana	cytosol	53.77	45.52
PGSC0003DMT400030364	Potato	plastid	39.31	45.31
AT4G09160.1	Thale cress	cytosol	61.3	45.06
Zm00001d012254_P003	Maize	mitochondrion	50.31	44.42
PGSC0003DMT400054383	Potato	cytosol	42.36	44.26
GSMUA_Achr5P25970_001	Banana	cytosol	49.29	43.6
EES10230	Sorghum	cytosol	44.2	42.38
Zm00001d042664_P001	Maize	plasma membrane	49.29	42.38
CDY05051	Canola	nucleus	59.47	42.07
KXG33790	Sorghum	cytosol	50.1	41.69
TraesCS3B01G417500.1	Wheat	golgi	48.88	41.52
TraesCS3A01G385300.1	Wheat	cytosol	48.68	41.35
Os05t0429400-01	Rice	plasma membrane	48.88	41.03
TraesCS3D01G378300.1	Wheat	cytosol	48.88	40.89
Os01t0874700-01	Rice	plasma membrane	50.51	40.46
TraesCS1D01G268600.1	Wheat	golgi	50.1	40.33
TraesCS1B01G279200.1	Wheat	cytosol	49.9	40.16
TraesCS1A01G268500.1	Wheat	cytosol	49.9	40.16
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	50.1	39.36
Zm00001d038262_P001	Maize	plasma membrane	49.49	39.19
OQU78068	Sorghum	cytosol	41.75	38.97
HORVU3Hr1G082110.2	Barley	plastid	48.88	37.21
HORVU1Hr1G075150.4	Barley	plasma membrane	50.31	37.2
PGSC0003DMT400026646	Potato	cytosol	32.18	35.51
Zm00001d010205_P002	Maize	cytosol	38.7	35.25

Protein Annotations

EntrezGene:102580007	Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:M1CER3
PFAM:PF00650	PFAM:PF03765	EnsemblPlantsGene:PGSC0003DMG400025646	PGSC:PGSC0003DMG400025646	EnsemblPlants:PGSC0003DMT400065886	PRINTS:PR00180
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000296A5FD	RefSeq:XP_006339368.1	SEG:seg	:

Description

Patellin-3 [Source:PGSC_GENE;Acc:PGSC0003DMG400025646]

Coordinates

chr11:-:15631403..15634384

Molecular Weight (calculated)

56212.0 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.451

Length

491 amino acids

Sequence
(BLAST)

001: MAETEHTHQP PLTAEEDILP PPSPEPLLAS VEVESVVEAV EEHHSVVTVV EKEAPLTEPP QEPTTTTLVE AQHVSLTLPE KELTESDKSK PVEEKKIPQS
101: LISFKEESNK VSDLSDSEVK ALEELKFLVQ EAIKDQTFTT GTTDLPQEVS IWGVPLLKDD RSDVILLKFL RARDFKVKES FAMLKNTILW RKEFNIEELV
201: DENLGDDLEK VVFMDGHDKE GHPVCYNVYG EFQNKELYNK TFGDEEKRNK FLRWRIQFLE RSIRKLDFSP GGINTIFQVS DLKNSPGPGK RELRIATRQA
301: LQLLQDNYPE FVAKQVFINV PWWYLAFYTM ISPFMTQRTK SKFVFAGPSK TAETLYKYIT PEQVPVQYGG LSVDYCECNP EFTSNDPVTE IIVKPATKQT
401: VEIIVNEKCI IVWELRVLGW EVTYSAEYVP NTDSGYTVNI QKPRKMTTAD EPVVSSSFKI VELGKILLTI DNPTSKKKKL LYRFKDKPYS D

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.