Factsheet for Zm00001d038262_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G72160.1	Zm00001d052380_P001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041705_P001	Maize	cytosol, mitochondrion	15.16	87.85
Zm00001d043169_P001	Maize	cytosol	28.87	84.83
Zm00001d005249_P001	Maize	mitochondrion	37.74	84.48
Zm00001d005304_P001	Maize	mitochondrion	36.77	83.82
OQU78068	Sorghum	cytosol	69.52	81.94
Os05t0429400-01	Rice	plasma membrane	74.84	79.32
Zm00001d010205_P002	Maize	cytosol	66.45	76.44
TraesCS1A01G268500.1	Wheat	cytosol	73.39	74.59
TraesCS1B01G279200.1	Wheat	cytosol	72.9	74.1
TraesCS1D01G268600.1	Wheat	golgi	72.74	73.93
Zm00001d012254_P003	Maize	mitochondrion	66.13	73.74
Zm00001d042664_P001	Maize	plasma membrane	65.65	71.28
VIT_09s0002g09040.t01	Wine grape	cytosol	12.42	67.54
HORVU1Hr1G075150.4	Barley	plasma membrane	70.65	65.96
GSMUA_Achr7P23220_001	Banana	cytosol	50.0	62.0
KRG99105	Soybean	cytosol	14.35	60.14
Bra000675.1-P	Field mustard	cytosol	29.19	58.39
CDX90715	Canola	cytosol	28.87	57.74
GSMUA_Achr5P25970_001	Banana	cytosol	51.61	57.66
GSMUA_Achr6P18780_001	Banana	cytosol	53.39	57.07
GSMUA_Achr3P22170_001	Banana	cytosol	47.9	56.46
VIT_07s0031g03220.t01	Wine grape	cytosol	44.35	52.68
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	35.97	52.59
CDY58916	Canola	cytosol	11.29	50.72
KRH59683	Soybean	cytosol	44.03	50.65
KRH54012	Soybean	nucleus	45.32	50.45
KRH63933	Soybean	plasma membrane	45.16	50.27
Zm00001d052665_P001	Maize	cytosol	16.29	50.0
VIT_18s0041g00430.t01	Wine grape	cytosol	48.55	49.67
PGSC0003DMT400065886	Potato	cytosol	39.19	49.49
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	39.03	49.39
CDY50441	Canola	plasma membrane	38.06	48.66
AT1G72160.1	Thale cress	nucleus	38.39	48.57
Solyc06g064940.2.1	Tomato	nucleus	45.0	48.1
CDX82180	Canola	nucleus	37.9	48.06
Solyc11g051160.1.1	Tomato	extracellular, plastid	45.48	47.88
CDY03654	Canola	nucleus	37.74	47.85
KRH41016	Soybean	endoplasmic reticulum	44.35	47.83
Bra003891.1-P	Field mustard	cytosol	38.87	47.82
VIT_05s0029g01570.t01	Wine grape	cytosol	30.97	47.76
Bra008013.1-P	Field mustard	nucleus	38.06	47.58
CDX68278	Canola	cytosol	33.55	47.38
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	47.74	47.36
PGSC0003DMT400013297	Potato	cytosol	44.03	47.31
KRH23751	Soybean	endoplasmic reticulum	45.16	46.2
KRH44929	Soybean	endoplasmic reticulum	42.74	46.01
VIT_18s0041g00420.t01	Wine grape	cytosol	42.42	45.19
CDX68279	Canola	cytosol	37.26	43.5
Bra016084.1-P	Field mustard	cytosol	39.03	43.37
CDY71835	Canola	cytosol	20.0	43.36
CDX96377	Canola	cytosol	38.87	43.35
Zm00001d038005_P001	Maize	mitochondrion, plastid	29.68	42.99
Bra003892.1-P	Field mustard	cytosol	35.81	42.53
Bra008012.1-P	Field mustard	cytosol	38.55	42.53
CDY03655	Canola	cytosol	38.71	42.48
Zm00001d046995_P001	Maize	plasma membrane	35.0	41.02
CDY71842	Canola	cytosol	31.77	40.96
CDX82182	Canola	cytosol	37.9	40.87
AT1G72150.1	Thale cress	cytosol	37.58	40.66
Zm00001d010049_P001	Maize	plastid	30.48	37.65
AT1G22530.1	Thale cress	cytosol	40.48	36.75
Bra040854.1-P	Field mustard	cytosol	41.61	36.54
CDY21368	Canola	cytosol	38.23	36.35
CDY66581	Canola	cytosol	35.97	35.62
AT4G09160.1	Thale cress	cytosol	36.61	33.98
CDY05051	Canola	nucleus	36.13	32.28

Protein Annotations

EntrezGene:100192106	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:AQK86174.1	UniProt:B4FBC9	EMBL:BT034417
EMBL:BT056021	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650
PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	SMART:SM00516
SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI00017B63D7	EnsemblPlantsGene:Zm00001d038262
EnsemblPlants:Zm00001d038262_P001	EnsemblPlants:Zm00001d038262_T001	SEG:seg	:	:	:

Description

Patellin-1

Coordinates

chr6:-:152608623..152611425

Molecular Weight (calculated)

68038.5 Da

IEP (calculated)

4.263

GRAVY (calculated)

-0.580

Length

620 amino acids

Sequence
(BLAST)

001: MADETKQEAA APAAEVVVTE EEKKAEETAP VAEEKAVEAA VEKAAEAEAG AEEKAAEADS EEEKKAEEAE EAAAGDEAAV IDGTGSFKEE SNLVSELPDP
101: ERTALAQLKE LVATALANGE FNLPPPPAKE EAKKEEPAKE EAPADKEDEP KAEEAAAQEP VKEEAKPEEP KTEAPAEAAP EEVKDETPVP EETKTEAPAP
201: EEPKAEEPAK EELKAEAATE AVAEETKPAE PVPEEEEKTV VVAEEEATKT VEAIEETVAV AVAAAASEEP EAGEPKEELI WGVPLAGDDE RTDTVLLKFL
301: RAREFKVKEA MAMLKSAVLW RKRFGIDELL LDADLGLREL EGVVFYRGAD REGHPVCYNV YGEFQDKELY ERAFGDEEKR ERFLKWRIQL LERGIREQLD
401: FSPSGICSMV QVTDLKNSPP MLGKHRAVTR QALALLQDNY PEFVAKKVFI NVPWWYLAAN KVMSPFLTQR TKSKIVFCSP GKSAETLFRY IAPEQVPVQF
501: GGLYKEDDTE FSTSDAVTEL TVKPSSKETV EIPATENSTV VWELRVLGWE VSYGAEFTPD AEGGYTVIVQ KTRKVPAHEE PIMKGSFKAT EPGKLVLGVN
601: NPASRKKKLL CRFKVRSAAA

Best Arabidopsis Sequence Match ( AT1G22530.2 )
(BLAST)

001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKEEEKA APGETKKEEK ATASTQVKRA SKFIKDIFVS VTTSEKKKEE EKPAVVTIEK AFAADQEEET KTVEAVEESI
301: VSITLPETAA YVEPEEVSIW GIPLLEDERS DVILLKFLRA RDFKVKEAFT MLKNTVQWRK ENKIDDLVSE DLEGSEFEKL VFTHGVDKQG HVVIYSSYGE
401: FQNKEIFSDK EKLSKFLKWR IQFQEKCVRS LDFSPEAKSS FVFVSDFRNA PGLGQRALWQ FIKRAVKQFE DNYPEFVAKE LFINVPWWYI PYYKTFGSII
501: TSPRTRSKMV LSGPSKSAET IFKYVAPEVV PVKYGGLSKD SPFTVEDGVT EAVVKSTSKY TIDLPATEGS TLSWELRVLG ADVSYGAQFE PSNEASYTVI
601: VSKNRKVGLT DEPVITDSFK ASEAGKVVIT IDNQTFKKKK VLYRSKTQA

Arabidopsis Description

PATL2Patellin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.