Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052380_P001 | Maize | plastid | 86.28 | 87.57 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 66.08 | 85.01 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 69.76 | 80.85 |
| Os11t0124300-01 | Rice | nucleus, plastid | 76.84 | 80.03 |
| Os12t0122000-01 | Rice | plastid | 76.84 | 78.94 |
| TraesCS5B01G143100.1 | Wheat | plastid | 74.19 | 78.84 |
| TraesCS5A01G144000.1 | Wheat | plastid | 74.48 | 77.93 |
| TraesCS5D01G148000.1 | Wheat | plastid | 74.78 | 77.64 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 35.4 | 75.95 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 69.03 | 75.85 |
| TraesCS4B01G124000.1 | Wheat | plastid | 74.19 | 74.08 |
| TraesCS4D01G122000.1 | Wheat | plastid | 74.19 | 74.08 |
| GSMUA_Achr11P... | Banana | plastid | 52.8 | 62.37 |
| CDX78219 | Canola | nucleus, plastid | 52.21 | 58.71 |
| CDX73496 | Canola | nucleus, plastid | 53.1 | 57.88 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 53.54 | 55.59 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 54.72 | 55.21 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 55.31 | 53.04 |
| Zm00001d021826_P001 | Maize | cytosol | 35.25 | 52.88 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 56.49 | 48.98 |
| Solyc10g074680.1.1 | Tomato | cytosol | 56.64 | 46.49 |
| PGSC0003DMT400043358 | Potato | cytosol | 56.34 | 46.25 |
| KRH40615 | Soybean | nucleus, plastid | 53.98 | 44.47 |
| KRH00551 | Soybean | nucleus, plastid | 53.98 | 43.47 |
| Zm00001d038518_P001 | Maize | cytosol | 25.37 | 34.61 |
| Zm00001d042127_P001 | Maize | plastid | 21.39 | 32.44 |
| Zm00001d044065_P001 | Maize | cytosol | 21.98 | 31.37 |
| Zm00001d011881_P001 | Maize | cytosol | 20.5 | 30.96 |
| Zm00001d015815_P001 | Maize | cytosol | 17.11 | 27.88 |
| Zm00001d046783_P001 | Maize | mitochondrion | 18.58 | 27.63 |
| Zm00001d025133_P001 | Maize | cytosol | 19.76 | 27.13 |
| Zm00001d003657_P001 | Maize | cytosol, mitochondrion, nucleus | 19.91 | 27.11 |
| Zm00001d013385_P001 | Maize | cytosol, plastid | 22.57 | 26.89 |
| Zm00001d033834_P001 | Maize | cytosol, plastid | 21.83 | 26.86 |
| Zm00001d042472_P001 | Maize | cytosol | 20.8 | 26.21 |
| Zm00001d013465_P001 | Maize | cytosol | 23.75 | 25.76 |
| Zm00001d033680_P001 | Maize | nucleus | 23.89 | 25.71 |
| Zm00001d045507_P001 | Maize | plastid | 23.01 | 25.32 |
| Zm00001d023248_P001 | Maize | cytosol | 18.29 | 24.51 |
| Zm00001d052464_P001 | Maize | cytosol, plasma membrane, plastid | 17.55 | 24.44 |
| Zm00001d009646_P001 | Maize | plastid | 16.52 | 23.58 |
| Zm00001d037901_P001 | Maize | cytosol, peroxisome, plastid | 15.34 | 22.51 |
| Zm00001d049249_P001 | Maize | plastid | 24.93 | 21.81 |
| Zm00001d052463_P001 | Maize | cytosol | 16.37 | 21.22 |
| Zm00001d023247_P001 | Maize | plastid | 16.08 | 19.46 |
Protein Annotations
| EnsemblPlants:Zm00001d005029_P001 | EnsemblPlants:Zm00001d005029_T001 | EnsemblPlantsGene:Zm00001d005029 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 | PFAM:PF03514 | PFscan:PS50985 | ProteinID:ONM20022.1 | SEG:seg |
| UniParc:UPI000221FB68 | UniProt:A0A1D6EIU2 | MapMan:15.5.12 | MapMan:26.3.1.5 | : | : |
Description
GRAS-transcription factor 37Protein SCARECROW
Coordinates
chr2:-:154743078..154746493
Molecular Weight (calculated)
72087.6 Da
IEP (calculated)
6.653
GRAVY (calculated)
-0.168
Length
678 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSVLLFP SSSSAAPSAP HSFPHSHATA IASSHSLLPP LPCSNPPPPL SSQDHVLIHY IHQLDEQEAA TMVRKRPAPD MDLPPPRRHV TGDLSDVTAA
101: AAAGGGPGAP SSASAQLPAL PTQLHQLPPA FQHHAAEVDV PPQPHPPAHS QAGGEAPAST TAWVDGIIRD IIGSSGGGAV SITQLIHNVR EIIHPCNPGL
201: ASLLELRLRS LLAADPAPLP QQQRALLHGA PAAAAGLALP LPPPLPDKRR HEPAPRCQQQ QQEEPHPAPQ SPKVPTAEET AAASAAAAKE RKEVQRRKQR
301: DEEGLHLLTL LLQCAEAVNA DNLDDAHQTL LEIAELATPF GTSTQRVAAY FAEAMSARVV SSCLGLYAPL PPGSPAAARL HGRVAAAFQV FNGISPFVKF
401: SHFTANQAIQ EAFEREERVH IIDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGASMEA LEATGKRLSD FADTLGLPFE FCAVDEKVGN VDPQKLGVTR
501: REAVAVHWLH HSLYDVTGSD SNTLRLIQRL APKVVTMVEQ DLSQSGSFLA RFVDAIHYYS ALFDSLDASY GEDSPERHVV EQQLLAREIR NVLAVGGPAR
601: AGAGGARFGS WREELARSGF RAASLAGGAA AQASLLLGMF PSDGYTLVEE KGALRLGWKD LCLLTASAWR PVQTPPCR
101: AAAGGGPGAP SSASAQLPAL PTQLHQLPPA FQHHAAEVDV PPQPHPPAHS QAGGEAPAST TAWVDGIIRD IIGSSGGGAV SITQLIHNVR EIIHPCNPGL
201: ASLLELRLRS LLAADPAPLP QQQRALLHGA PAAAAGLALP LPPPLPDKRR HEPAPRCQQQ QQEEPHPAPQ SPKVPTAEET AAASAAAAKE RKEVQRRKQR
301: DEEGLHLLTL LLQCAEAVNA DNLDDAHQTL LEIAELATPF GTSTQRVAAY FAEAMSARVV SSCLGLYAPL PPGSPAAARL HGRVAAAFQV FNGISPFVKF
401: SHFTANQAIQ EAFEREERVH IIDLDIMQGL QWPGLFHILA SRPGGPPRVR LTGLGASMEA LEATGKRLSD FADTLGLPFE FCAVDEKVGN VDPQKLGVTR
501: REAVAVHWLH HSLYDVTGSD SNTLRLIQRL APKVVTMVEQ DLSQSGSFLA RFVDAIHYYS ALFDSLDASY GEDSPERHVV EQQLLAREIR NVLAVGGPAR
601: AGAGGARFGS WREELARSGF RAASLAGGAA AQASLLLGMF PSDGYTLVEE KGALRLGWKD LCLLTASAWR PVQTPPCR
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.