Factsheet for Zm00001d021973_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d006682_P001
Zm00001d007407_P006
Zm00001d009030_P002
Zm00001d021826_P001
Zm00001d021932_P001
Zm00001d031678_P003
Zm00001d039254_P001
Zm00001d052380_P001
Zm00001d052666_P014
Zm00001d052695_P016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	Zm00001d006682_P001	AT1G03840.1	17785527
AT4G37650.1	Zm00001d009030_P002	AT1G03840.1	17785527
AT4G37650.1	Zm00001d021932_P001	AT1G03840.1	17785527
AT4G37650.1	Zm00001d039254_P001	AT1G03840.1	17785527
AT4G37650.1	Zm00001d007407_P006	AT3G12280.1	22921914
AT4G37650.1	Zm00001d031678_P003	AT3G12280.1	22921914
AT4G37650.1	Zm00001d052666_P014	AT3G12280.1	22921914
AT4G37650.1	Zm00001d052695_P016	AT3G12280.1	22921914
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	17446396
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	17446396
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	17785527
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	17785527
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	18500650
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	18500650
AT4G37650.1	Zm00001d005029_P001	AT3G54220.1	22921914
AT4G37650.1	Zm00001d052380_P001	AT3G54220.1	22921914
AT4G37650.1	Zm00001d021826_P001	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90176	Sorghum	nucleus, plastid	91.89	90.97
TraesCS2D01G194800.1	Wheat	cytosol, plastid	58.28	90.31
TraesCS2A01G192600.1	Wheat	plastid	85.3	85.02
Os07t0586900-01	Rice	plastid	83.28	81.89
Zm00001d006721_P001	Maize	nucleus	79.22	80.03
TraesCS2B01G214600.1	Wheat	nucleus, plastid	78.55	78.15
HORVU2Hr1G035730.4	Barley	cytosol, plastid	62.5	62.08
GSMUA_Achr8P30950_001	Banana	mitochondrion	54.9	61.32
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	54.9	61.09
GSMUA_Achr4P16460_001	Banana	nucleus	53.72	59.89
Zm00001d029607_P001	Maize	plastid	62.16	58.41
KRH77129	Soybean	plastid	43.75	54.41
PGSC0003DMT400055239	Potato	nucleus	41.55	54.07
KRH28353	Soybean	plastid	43.75	53.73
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	44.93	52.47
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	42.91	51.42
Bra010606.1-P	Field mustard	nucleus	40.37	51.07
CDY50264	Canola	nucleus, plastid	40.2	50.11
AT4G37650.1	Thale cress	cytosol, plastid	43.75	48.78
KRH58109	Soybean	cytosol, plastid	40.88	48.5
KRH04424	Soybean	plastid	40.88	48.11
CDX72645	Canola	cytosol, plastid	42.74	47.56
Bra017842.1-P	Field mustard	cytosol, plastid	42.74	47.56
Bra011777.1-P	Field mustard	cytosol, plastid	42.74	47.47
CDY44032	Canola	cytosol, plastid	41.22	46.48
Zm00001d038609_P001	Maize	cytosol	25.51	35.45
Zm00001d006744_P001	Maize	plastid	23.48	30.48
Zm00001d021998_P001	Maize	plastid	22.64	29.39
Zm00001d029474_P001	Maize	cytosol	20.61	23.19
Zm00001d047266_P001	Maize	nucleus	20.44	22.62
Zm00001d048624_P001	Maize	nucleus	7.6	20.45
Zm00001d022116_P001	Maize	nucleus	18.07	19.63

Protein Annotations

EntrezGene:100383480	MapMan:15.5.12	MapMan:26.3.1.4	EMBL:BT067328	UniProt:C0PGA9	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956	GO:GO:0009987
GO:GO:0043565	GO:GO:0048366	InterPro:IPR005202	EMBL:KJ726881	ProteinID:ONM59196.1	PFAM:PF03514
PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI000195CAA4
EnsemblPlantsGene:Zm00001d021973	EnsemblPlants:Zm00001d021973_P001	EnsemblPlants:Zm00001d021973_T001	SEG:seg	:	:

Description

GRAS-transcription factor 19Protein SHORT-ROOT

Coordinates

chr7:+:167371997..167373775

Molecular Weight (calculated)

63907.9 Da

IEP (calculated)

5.948

GRAVY (calculated)

-0.370

Length

592 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL QASEQQQQQS ASYNSRSTTS SGSRSSSHQT NASYNYYYHS NSSGGGGGQY YYGQQHPHQH QHQQYYLEPY QQEECGNTHH LYMDEDFSSS
101: SSSRQHFHSH GAVVQPPTSS TATPTAPTPS LSTSSTAAGA AHALFEAADL SFPPDLNLDF SSPASSSGGG AASSAAVGGG GGGRWASQLL LECARAVAGR
201: DSQRVQQLMW MLNELASPYG DVEQKLASYF LQGLFARLTA SGPRTLRTLA AASDRNTSFD STRRTALRFQ ELSPWSSFGH VAANGAILES FLEAAAASPE
301: PQRLHILDLS NTFCTQWPTL LEALATRSAD DTPHLSITTV VSSAPSAPTA AVQRVMREIG QRMEKFARLM GVPFSFRAVH HAGDLAGLDL DALDLRDGGA
401: TTALAINCVN SLRGVVPGGA RRRDAFAASL RRLDPRVVTV VEEEADLVAF DPGAPEESGD TEAAFLKVFG EGLRFFSAYM DSLEESFPKT SNERLALERG
501: AGRAIVDLVS CPASESMERR ETAASWARRM RSSGFSPVAF SEDVADDVRS LLRRYREGWS MRDAGLDDSA AGAGVFLAWK EQPLVWASAW RP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.