CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95964
KRH00551
KRH13310
KRH20664
KRH22332
KRH24117
KRH26995
KRH29089
KRH40615
KRH63701
KRH67672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	KRH22332	AT1G03840.1	17785527
AT4G37650.1	KRH26995	AT1G03840.1	17785527
AT4G37650.1	KRH13310	AT3G12280.1	22921914
AT4G37650.1	KRH20664	AT3G12280.1	22921914
AT4G37650.1	KRH63701	AT3G12280.1	22921914
AT4G37650.1	KRH00551	AT3G54220.1	17446396
AT4G37650.1	KRH40615	AT3G54220.1	17446396
AT4G37650.1	KRH00551	AT3G54220.1	17785527
AT4G37650.1	KRH40615	AT3G54220.1	17785527
AT4G37650.1	KRH00551	AT3G54220.1	18500650
AT4G37650.1	KRH40615	AT3G54220.1	18500650
AT4G37650.1	KRH00551	AT3G54220.1	22921914
AT4G37650.1	KRH40615	AT3G54220.1	22921914
AT4G37650.1	KRG95964	AT5G03150.1	17785527
AT4G37650.1	KRH67672	AT5G03150.1	17785527
AT4G37650.1	KRH24117	AT5G41920.1	18500650
AT4G37650.1	KRH29089	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04424	Soybean	plastid	84.57	83.9
KRH77129	Soybean	plastid	69.34	72.69
KRH28353	Soybean	plastid	69.34	71.78
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	66.33	67.0
PGSC0003DMT400055239	Potato	nucleus	57.92	63.52
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	64.33	63.31
Bra010606.1-P	Field mustard	nucleus	53.91	57.48
TraesCS2D01G194800.1	Wheat	cytosol, plastid	43.49	56.81
CDY50264	Canola	nucleus, plastid	52.71	55.37
CDY44032	Canola	cytosol, plastid	56.91	54.1
AT4G37650.1	Thale cress	cytosol, plastid	56.51	53.11
CDX72645	Canola	cytosol, plastid	56.31	52.82
Bra017842.1-P	Field mustard	cytosol, plastid	56.11	52.63
KRH23228	Soybean	cytosol	46.29	52.14
Bra011777.1-P	Field mustard	cytosol, plastid	55.51	51.97
KRH10104	Soybean	cytosol	45.09	51.49
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	52.3	49.06
GSMUA_Achr8P30950_001	Banana	mitochondrion	50.1	47.17
GSMUA_Achr4P16460_001	Banana	nucleus	50.1	47.08
TraesCS2B01G214600.1	Wheat	nucleus, plastid	49.3	41.34
Zm00001d006721_P001	Maize	nucleus	48.5	41.3
Os07t0586900-01	Rice	plastid	49.5	41.03
OQU90176	Sorghum	nucleus, plastid	49.1	40.97
Zm00001d021973_P001	Maize	nucleus	48.5	40.88
TraesCS2A01G192600.1	Wheat	plastid	48.3	40.57
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	48.7	40.3
HORVU2Hr1G035730.4	Barley	cytosol, plastid	46.69	39.09
Zm00001d029607_P001	Maize	plastid	48.1	38.1
EER94653	Sorghum	plastid	47.49	35.69
KRH22503	Soybean	cytosol	26.45	28.27
KRH26849	Soybean	cytosol	25.85	28.04
KRH04459	Soybean	plastid	23.25	24.07
KRH58050	Soybean	cytosol	25.25	24.0
KRH06192	Soybean	nucleus	24.45	22.47
KRH47610	Soybean	cytosol	24.05	22.14

Protein Annotations

EntrezGene:100778524	MapMan:15.5.12	MapMan:26.3.1.4	EMBL:ACUP02003199	EnsemblPlantsGene:GLYMA_05G105600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956
GO:GO:0009987	GO:GO:0043565	GO:GO:0045930	GO:GO:0048366	GO:GO:0055072	InterPro:IPR005202
UniProt:K7KPG8	EnsemblPlants:KRH58109	ProteinID:KRH58109	ProteinID:KRH58109.1	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI000233A3F3	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:28038028..28040096

Molecular Weight (calculated)

56787.9 Da

IEP (calculated)

5.143

GRAVY (calculated)

-0.478

Length

499 amino acids

Sequence
(BLAST)

001: MDTLFRLVSF HQQQQPDPSL NSTTSRTSSS SRSSRQNYYP YSSYQEEEEC FNFYMDEEDL SSSSSKYYYP YQPHHQQQQQ QQHNVSNIST NTFSTTPNTD
101: YSYSFSPTPQ VQDFNFEFSP NWSHNLLLES ARAVADNNST RLHHLLWMLN ELSSPYGDTD QKLAAYFLQA LFSRVTEAGD RTYGTLASAS EKTCSFESTR
201: KTVLKFQEVS PWTTFGHVAS NGAILEALEG NPKLHILDIS NTYCTQWPTL LEALATRSDE TPHLRLTTVV TGRTSNSVQR VMKEIGTRME KFARLMGVPF
301: KFNVIHHYGD LSEFNFNELD IKEDEALAVN CVNRLHSVSA VGNNRDALIS SLQALQPRIV TVVEEEADLD VGIDGYEFVK GFEECLRWFR VYFDALDESF
401: VKTSNERLML ERAAGRAVVD LVACSTAESV ERRETAARWV ARLHNGGLKA APFSEEVCDD VRALLRRYRE GWSMAACSDA GIFLSWKDTP VVWASAWRP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.