Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G194800.1 | Wheat | cytosol, plastid | 62.96 | 97.91 |
| TraesCS2B01G214600.1 | Wheat | nucleus, plastid | 89.39 | 89.24 |
| Zm00001d021973_P001 | Maize | nucleus | 85.02 | 85.3 |
| OQU90176 | Sorghum | nucleus, plastid | 83.5 | 82.94 |
| Os07t0586900-01 | Rice | plastid | 83.84 | 82.72 |
| Zm00001d006721_P001 | Maize | nucleus | 74.24 | 75.26 |
| HORVU2Hr1G035730.4 | Barley | cytosol, plastid | 67.34 | 67.11 |
| GSMUA_Achr8P30950_001 | Banana | mitochondrion | 54.38 | 60.94 |
| GSMUA_Achr1P22470_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 54.55 | 60.9 |
| GSMUA_Achr4P16460_001 | Banana | nucleus | 53.7 | 60.08 |
| KRH77129 | Soybean | plastid | 42.42 | 52.94 |
| PGSC0003DMT400055239 | Potato | nucleus | 39.9 | 52.09 |
| KRH28353 | Soybean | plastid | 41.92 | 51.66 |
| Solyc02g092370.1.1 | Tomato | mitochondrion, nucleus | 42.76 | 50.1 |
| Bra010606.1-P | Field mustard | nucleus | 39.39 | 50.0 |
| VIT_07s0129g00030.t01 | Wine grape | cytosol, plastid | 41.41 | 49.8 |
| CDY50264 | Canola | nucleus, plastid | 39.06 | 48.84 |
| KRH58109 | Soybean | cytosol, plastid | 40.57 | 48.3 |
| KRH04424 | Soybean | plastid | 40.07 | 47.32 |
| CDX72645 | Canola | cytosol, plastid | 41.75 | 46.62 |
| Bra017842.1-P | Field mustard | cytosol, plastid | 41.75 | 46.62 |
| AT4G37650.1 | Thale cress | cytosol, plastid | 41.58 | 46.52 |
| CDY44032 | Canola | cytosol, plastid | 40.74 | 46.1 |
| Bra011777.1-P | Field mustard | cytosol, plastid | 41.08 | 45.78 |
| TraesCS1A01G319700.1 | Wheat | cytosol | 23.4 | 33.49 |
| TraesCS2A01G194600.1 | Wheat | plastid | 21.89 | 28.32 |
| TraesCS2A01G460200.1 | Wheat | nucleus | 19.87 | 22.87 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.3.1.4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 | GO:GO:0009058 |
| GO:GO:0009956 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045930 | GO:GO:0048366 | GO:GO:0055072 |
| InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF9 | InterPro:Short-root |
| InterPro:TF_GRAS | EnsemblPlantsGene:TraesCS2A01G192600 | EnsemblPlants:TraesCS2A01G192600.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2A:+:160686645..160688429
Molecular Weight (calculated)
63805.7 Da
IEP (calculated)
5.853
GRAVY (calculated)
-0.402
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTLFRLVSL QASEQQQQQS ASYNSRSTTS SGSRSSSHQT NASYNYYHHS SSSGGGGGGG GGQYYYSQQQ PQQSYYLEPY QEECGGNAHQ HHLYMDEDFS
101: SSSSSRQHFH SHGGAAHPPT SSATPTAPTP PLSTSSTAGG AGHALFEAAD LSFPPDLNLD FSSPASSSGA GGTASSAAVG GGGGGRWASQ LLMECARAVA
201: TRESQRVQQL MWMLNELASP YGDVEQKLAS YFLQGLFARL TASGPRTLRT LAAATDRNTS FDSTRRTALR FQELSPWSSF GHVAANGAIL ESFLEAAAAS
301: SEPQRFHILD LSNTFCTQWP TLLEALATRS PDDTPHLSIT TVVSAAPSAP TSAVQRVMRE IGQRMEKFAR LMGVPFRFRA VHHSGDLAEL DLDSLDLREG
401: GATTGIAVNC MNSLRGVVPG GARRRGAFAA SLRRLEPRVV TVVEEEADLV ATDADASDEG GDTEAAFLKV FGEGLRFFSA YMDSLEESFP KTSNERLALE
501: RGAGRAIVDL VSCPASESME RRETAAAWAR RLRSAGFSPV PFSEDVADDV RSLLRRYREG WSMREAGTDD SAAGAGVFLA WKEQPLVWAS AWRP
101: SSSSSRQHFH SHGGAAHPPT SSATPTAPTP PLSTSSTAGG AGHALFEAAD LSFPPDLNLD FSSPASSSGA GGTASSAAVG GGGGGRWASQ LLMECARAVA
201: TRESQRVQQL MWMLNELASP YGDVEQKLAS YFLQGLFARL TASGPRTLRT LAAATDRNTS FDSTRRTALR FQELSPWSSF GHVAANGAIL ESFLEAAAAS
301: SEPQRFHILD LSNTFCTQWP TLLEALATRS PDDTPHLSIT TVVSAAPSAP TSAVQRVMRE IGQRMEKFAR LMGVPFRFRA VHHSGDLAEL DLDSLDLREG
401: GATTGIAVNC MNSLRGVVPG GARRRGAFAA SLRRLEPRVV TVVEEEADLV ATDADASDEG GDTEAAFLKV FGEGLRFFSA YMDSLEESFP KTSNERLALE
501: RGAGRAIVDL VSCPASESME RRETAAAWAR RLRSAGFSPV PFSEDVADDV RSLLRRYREG WSMREAGTDD SAAGAGVFLA WKEQPLVWAS AWRP
001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
Arabidopsis Description
SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.