Factsheet for PGSC0003DMT400055239

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004390
PGSC0003DMT400008694
PGSC0003DMT400024272
PGSC0003DMT400027159
PGSC0003DMT400030280
PGSC0003DMT400030652
PGSC0003DMT400043358

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	PGSC0003DMT400024272	AT1G03840.1	17785527
AT4G37650.1	PGSC0003DMT400030280	AT3G12280.1	22921914
AT4G37650.1	PGSC0003DMT400043358	AT3G54220.1	17446396
AT4G37650.1	PGSC0003DMT400043358	AT3G54220.1	17785527
AT4G37650.1	PGSC0003DMT400043358	AT3G54220.1	18500650
AT4G37650.1	PGSC0003DMT400043358	AT3G54220.1	22921914
AT4G37650.1	PGSC0003DMT400004390	AT5G03150.1	17785527
AT4G37650.1	PGSC0003DMT400008694	AT5G03150.1	17785527
AT4G37650.1	PGSC0003DMT400027159	AT5G03150.1	17785527
AT4G37650.1	PGSC0003DMT400030652	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	87.25	78.3
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	73.19	67.41
KRH77129	Soybean	plastid	64.18	61.34
KRH28353	Soybean	plastid	64.84	61.2
KRH58109	Soybean	cytosol, plastid	63.52	57.92
Bra010606.1-P	Field mustard	nucleus	59.34	57.69
KRH04424	Soybean	plastid	63.52	57.46
TraesCS2D01G194800.1	Wheat	cytosol, plastid	47.03	56.02
CDY50264	Canola	nucleus, plastid	58.02	55.58
PGSC0003DMT400037884	Potato	cytosol	49.23	53.46
CDY44032	Canola	cytosol, plastid	60.66	52.57
Bra011777.1-P	Field mustard	cytosol, plastid	60.44	51.59
CDX72645	Canola	cytosol, plastid	60.22	51.5
Bra017842.1-P	Field mustard	cytosol, plastid	60.22	51.5
AT4G37650.1	Thale cress	cytosol, plastid	60.0	51.41
GSMUA_Achr8P30950_001	Banana	mitochondrion	56.92	48.87
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	56.04	47.93
GSMUA_Achr4P16460_001	Banana	nucleus	54.95	47.08
Zm00001d021973_P001	Maize	nucleus	54.07	41.55
Zm00001d006721_P001	Maize	nucleus	52.97	41.13
OQU90176	Sorghum	nucleus, plastid	53.19	40.47
Os07t0586900-01	Rice	plastid	53.19	40.2
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	53.19	40.13
TraesCS2A01G192600.1	Wheat	plastid	52.09	39.9
TraesCS2B01G214600.1	Wheat	nucleus, plastid	51.65	39.5
HORVU2Hr1G035730.4	Barley	cytosol, plastid	50.55	38.59
Zm00001d029607_P001	Maize	plastid	51.43	37.14
EER94653	Sorghum	plastid	53.63	36.75
PGSC0003DMT400067360	Potato	cytosol	29.01	30.91
PGSC0003DMT400036577	Potato	cytosol	8.79	30.77
PGSC0003DMT400064187	Potato	plastid	25.71	26.71
PGSC0003DMT400089692	Potato	nucleus	24.18	20.3

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356
GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0048366	InterPro:IPR005202
UniProt:M1BXM5	PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400021444	PGSC:PGSC0003DMG400021444	EnsemblPlants:PGSC0003DMT400055239	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF9	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI00029494BA	SEG:seg

Description

SHORT-ROOT protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021444]

Coordinates

chr2:-:42726120..42728103

Molecular Weight (calculated)

51282.3 Da

IEP (calculated)

6.121

GRAVY (calculated)

-0.437

Length

455 amino acids

Sequence
(BLAST)

001: MDEDDFSSSS SKHNTNYPPP HYNQYQQISN TPTPTTTSST PTHQSQSQSH HHYDHQFSPA RDLNLEFASS FSGKWATDIL LETSRAIADK NSTRVQQLMW
101: MLNELSSPYG DTEQKLASYF LQALFSRMTD SGERCYRTLL SASDKTCSFE STRKLVLKFQ EVSPWTTFGH VASNGAIMEA LEGESKLHII DISNTYCTQW
201: PTLLEALATR TDETPHLRLT TVVAASRGAA SVQKVMKEIG SRMEKFARLM GVPFKFNVIH HAGNLSELDI GALDIKEDEA LAINCIGALH SVTPAGNRRD
301: YLISLFRRLQ PRIVTIVEEE ADLDVGVDGF DFVKGFQECL KWLRVYFESL DESFSKTSNE RLMLERQAGR SIVDLLACPP SESMERRETG AKWSHRMHAG
401: GFSQLLYSDE VCDDVRALLR RYKDGWSMGQ CGGDSAGIFL SWKEQPVVWA SAWKP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.