Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G192600.1 | Wheat | plastid | 97.91 | 62.96 |
| HORVU2Hr1G035730.4 | Barley | cytosol, plastid | 97.64 | 62.58 |
| TraesCS2B01G214600.1 | Wheat | nucleus, plastid | 97.38 | 62.52 |
| Zm00001d006721_P001 | Maize | nucleus | 91.88 | 59.9 |
| OQU90176 | Sorghum | nucleus, plastid | 91.62 | 58.53 |
| Zm00001d021973_P001 | Maize | nucleus | 90.31 | 58.28 |
| Os07t0586900-01 | Rice | plastid | 91.62 | 58.14 |
| GSMUA_Achr8P30950_001 | Banana | mitochondrion | 73.04 | 52.64 |
| GSMUA_Achr1P22470_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 71.47 | 51.32 |
| GSMUA_Achr4P16460_001 | Banana | nucleus | 69.9 | 50.28 |
| PGSC0003DMT400055239 | Potato | nucleus | 56.02 | 47.03 |
| Bra010606.1-P | Field mustard | nucleus | 55.76 | 45.51 |
| KRH77129 | Soybean | plastid | 56.54 | 45.38 |
| KRH28353 | Soybean | plastid | 56.54 | 44.81 |
| KRH58109 | Soybean | cytosol, plastid | 56.81 | 43.49 |
| CDY50264 | Canola | nucleus, plastid | 53.93 | 43.37 |
| VIT_07s0129g00030.t01 | Wine grape | cytosol, plastid | 55.76 | 43.12 |
| KRH04424 | Soybean | plastid | 55.76 | 42.35 |
| Solyc02g092370.1.1 | Tomato | mitochondrion, nucleus | 55.5 | 41.81 |
| AT4G37650.1 | Thale cress | cytosol, plastid | 57.07 | 41.05 |
| Bra017842.1-P | Field mustard | cytosol, plastid | 56.81 | 40.79 |
| CDX72645 | Canola | cytosol, plastid | 56.54 | 40.6 |
| CDY44032 | Canola | cytosol, plastid | 55.5 | 40.38 |
| Bra011777.1-P | Field mustard | cytosol, plastid | 56.28 | 40.34 |
| TraesCS1D01G319500.1 | Wheat | cytosol | 32.2 | 29.64 |
| TraesCS2D01G193300.1 | Wheat | plastid | 30.1 | 25.05 |
| TraesCS2D01G460500.1 | Wheat | nucleus | 24.08 | 17.83 |
Protein Annotations
| MapMan:15.5.12 | MapMan:26.3.1.4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0007049 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 | GO:GO:0009058 |
| GO:GO:0009956 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0045930 | GO:GO:0048366 | GO:GO:0055072 |
| InterPro:IPR005202 | PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF9 | InterPro:Short-root |
| InterPro:TF_GRAS | EnsemblPlantsGene:TraesCS2D01G194800 | EnsemblPlants:TraesCS2D01G194800.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:-:140549243..140551033
Molecular Weight (calculated)
41642.0 Da
IEP (calculated)
5.196
GRAVY (calculated)
-0.213
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNELASPYG DVEQKLASYF LQGLFARLTA SGPRTLRTLA AATDRNTSFD STRRTALRFQ ELSPWSSFGH VAANGAILES FLEAAAASSE PQRFHILDLS
101: NTFCTQWPTL LEALATRSPD DTPHLSITTV VSAAPSAPTS AVQRVMREIG QRMEKFARLM GVPFRFRAVH HSGDLAELDL DSLDLREGGA TTGIAVNCMN
201: SLRGVVPGGA RRRGAFAASL RRLEPRVVTV VEEEADLVAT DADASDEGGD TEAAFLKVFG EGLRFFSAYM DSLEESFPKT SNERLALERG AGRAIVDLVS
301: CPASESMERR ETAAAWARRL RSAGFSPVPF SEDVADDVRS LLRRYREGWS MREAGTDDSA AGAGVFLAWK EQPLVWASAW RP
101: NTFCTQWPTL LEALATRSPD DTPHLSITTV VSAAPSAPTS AVQRVMREIG QRMEKFARLM GVPFRFRAVH HSGDLAELDL DSLDLREGGA TTGIAVNCMN
201: SLRGVVPGGA RRRGAFAASL RRLEPRVVTV VEEEADLVAT DADASDEGGD TEAAFLKVFG EGLRFFSAYM DSLEESFPKT SNERLALERG AGRAIVDLVS
301: CPASESMERR ETAAAWARRL RSAGFSPVPF SEDVADDVRS LLRRYREGWS MREAGTDDSA AGAGVFLAWK EQPLVWASAW RP
001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T
Arabidopsis Description
SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.