Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G148000.1 | Wheat | plastid | 98.61 | 97.86 |
| TraesCS5B01G143100.1 | Wheat | plastid | 96.3 | 97.81 |
| HORVU5Hr1G045920.2 | Barley | cytosol | 87.19 | 96.58 |
| KXG22896 | Sorghum | cytosol, plasma membrane | 65.9 | 81.02 |
| Os11t0124300-01 | Rice | nucleus, plastid | 81.17 | 80.8 |
| Os12t0122000-01 | Rice | plastid | 82.25 | 80.76 |
| TraesCS4A01G191300.1 | Wheat | cytosol | 76.7 | 80.55 |
| Bra007056.1-P | Field mustard | mitochondrion, plastid | 37.81 | 77.53 |
| Zm00001d052380_P001 | Maize | plastid | 79.63 | 77.25 |
| Zm00001d005029_P001 | Maize | plastid | 77.93 | 74.48 |
| OQU82754 | Sorghum | plastid | 81.64 | 74.4 |
| GSMUA_Achr11P... | Banana | plastid | 55.25 | 62.37 |
| CDX78219 | Canola | nucleus, plastid | 54.78 | 58.87 |
| CDX73496 | Canola | nucleus, plastid | 55.86 | 58.2 |
| AT3G54220.1 | Thale cress | nucleus, plastid | 55.71 | 55.28 |
| GSMUA_Achr8P09400_001 | Banana | cytosol | 56.79 | 54.76 |
| TraesCS2A01G200700.1 | Wheat | cytosol | 36.88 | 53.11 |
| GSMUA_Achr5P21440_001 | Banana | nucleus, plastid | 57.87 | 53.04 |
| VIT_08s0056g00050.t01 | Wine grape | nucleus | 60.03 | 49.74 |
| Solyc10g074680.1.1 | Tomato | cytosol | 58.02 | 45.52 |
| PGSC0003DMT400043358 | Potato | cytosol | 57.87 | 45.4 |
| KRH40615 | Soybean | nucleus, plastid | 56.17 | 44.23 |
| KRH00551 | Soybean | nucleus, plastid | 56.64 | 43.59 |
| TraesCS1A01G304000.1 | Wheat | peroxisome | 25.46 | 33.6 |
| TraesCS3A01G487500.1 | Wheat | cytosol, plastid | 23.15 | 33.56 |
| TraesCS4A01G466700.1 | Wheat | cytosol, nucleus, peroxisome | 16.67 | 33.13 |
| TraesCS6A01G159500.1 | Wheat | cytosol | 19.75 | 32.65 |
| TraesCS7A01G382800.1 | Wheat | cytosol | 20.37 | 30.99 |
| TraesCS5A01G511900.1 | Wheat | cytosol | 20.83 | 30.96 |
| TraesCS3A01G233000.1 | Wheat | plasma membrane | 23.92 | 30.94 |
| TraesCS1A01G413800.1 | Wheat | cytosol, nucleus, plastid | 21.76 | 29.25 |
| TraesCS3A01G392600.1 | Wheat | cytosol | 20.99 | 28.45 |
| TraesCS3A01G392400.1 | Wheat | cytosol | 22.53 | 28.13 |
| TraesCS2A01G304000.1 | Wheat | cytosol, mitochondrion, nucleus | 20.52 | 27.71 |
| TraesCS3A01G392500.1 | Wheat | cytosol | 22.07 | 27.66 |
| TraesCS2A01G532900.1 | Wheat | cytosol | 18.21 | 27.44 |
| TraesCS4A01G260600.1 | Wheat | cytosol | 21.76 | 25.87 |
| TraesCS4A01G271000.1 | Wheat | cytosol | 24.07 | 25.16 |
| TraesCS4A01G430600.1 | Wheat | plastid | 23.77 | 24.8 |
| TraesCS4A01G185900.1 | Wheat | cytosol | 16.98 | 24.66 |
| TraesCS7A01G059000.1 | Wheat | plastid | 23.61 | 24.4 |
| TraesCS2A01G096800.1 | Wheat | nucleus | 26.39 | 23.92 |
| TraesCS5A01G135000.1 | Wheat | mitochondrion | 20.22 | 23.6 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G144000.1 | EnsemblPlantsGene:TraesCS5A01G144000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF12 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | MapMan:26.3.1.5 | : |
Description
No Description!
Coordinates
chr5A:-:319752041..319754543
Molecular Weight (calculated)
69460.7 Da
IEP (calculated)
6.509
GRAVY (calculated)
-0.156
Length
648 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSSLLLFP SSSSSAPRSS YSHATASSHC HLLPCPPDFL LHLHLLDHRE QEPAAAAMVR KRPATDMDLP PPRRHVTGDL SDMTAGPPVL SSATAQLPAL
101: PSQLLPPFQL QQQQQQQPVD HMDVAAAPAQ AGEAANTTAF VDGIIRDIIG SSGAGVSVAQ LIHNVREIIH PCNPGLASLL ELRLRSLLAS DPAPPQQHQH
201: QPALLPNAPM PMVALPPPPP DKRRREEERE PNNPPQSPKP PSAEEAAAAA AAAAAAASAA VKERKEGQRR KQRDEEGLHL LTLLLQCAES VNADNLDEAQ
301: TALLEIAELA TPFGTSTQRV AAYFAEAVSA RLVSSCLGLY APLPHASPAA SRLVNGRVAA AFQVFNGISP LVKFSHFTAN QAIQEAFERE ERVHIIDLDI
401: MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMDALEATGK RLSDFADTLG LPFEFCPVAD KAGNLDPEKL GVTRREAVAV HWLHHSLYDV TGSDSNTLCL
501: IKRLAPKVVT MVEQDLRHTG SFLARFVEAI HYYSALFDSL DASYGEDSPE RHVVEQQLLS REIRNVLAVG GPSRTGDVKF GCWRDSLARS GFGAASLAGS
601: AAAQAALLLG MFPSDGYTLV EENGALKLGW KDLTLLTASA WRPMHARA
101: PSQLLPPFQL QQQQQQQPVD HMDVAAAPAQ AGEAANTTAF VDGIIRDIIG SSGAGVSVAQ LIHNVREIIH PCNPGLASLL ELRLRSLLAS DPAPPQQHQH
201: QPALLPNAPM PMVALPPPPP DKRRREEERE PNNPPQSPKP PSAEEAAAAA AAAAAAASAA VKERKEGQRR KQRDEEGLHL LTLLLQCAES VNADNLDEAQ
301: TALLEIAELA TPFGTSTQRV AAYFAEAVSA RLVSSCLGLY APLPHASPAA SRLVNGRVAA AFQVFNGISP LVKFSHFTAN QAIQEAFERE ERVHIIDLDI
401: MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMDALEATGK RLSDFADTLG LPFEFCPVAD KAGNLDPEKL GVTRREAVAV HWLHHSLYDV TGSDSNTLCL
501: IKRLAPKVVT MVEQDLRHTG SFLARFVEAI HYYSALFDSL DASYGEDSPE RHVVEQQLLS REIRNVLAVG GPSRTGDVKF GCWRDSLARS GFGAASLAGS
601: AAAQAALLLG MFPSDGYTLV EENGALKLGW KDLTLLTASA WRPMHARA
001: MAESGDFNGG QPPPHSPLRT TSSGSSSSNN RGPPPPPPPP LVMVRKRLAS EMSSNPDYNN SSRPPRRVSH LLDSNYNTVT PQQPPSLTAA ATVSSQPNPP
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
101: LSVCGFSGLP VFPSDRGGRN VMMSVQPMDQ DSSSSSASPT VWVDAIIRDL IHSSTSVSIP QLIQNVRDII FPCNPNLGAL LEYRLRSLML LDPSSSSDPS
201: PQTFEPLYQI SNNPSPPQQQ QQHQQQQQQH KPPPPPIQQQ ERENSSTDAP PQPETVTATV PAVQTNTAEA LRERKEEIKR QKQDEEGLHL LTLLLQCAEA
301: VSADNLEEAN KLLLEISQLS TPYGTSAQRV AAYFSEAMSA RLLNSCLGIY AALPSRWMPQ THSLKMVSAF QVFNGISPLV KFSHFTANQA IQEAFEKEDS
401: VHIIDLDIMQ GLQWPGLFHI LASRPGGPPH VRLTGLGTSM EALQATGKRL SDFADKLGLP FEFCPLAEKV GNLDTERLNV RKREAVAVHW LQHSLYDVTG
501: SDAHTLWLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA SYGEESEERH VVEQQLLSKE IRNVLAVGGP SRSGEVKFES WREKMQQCGF
601: KGISLAGNAA TQATLLLGMF PSDGYTLVDD NGTLKLGWKD LSLLTASAWT PRS
Arabidopsis Description
SCRProtein SCARECROW [Source:UniProtKB/Swiss-Prot;Acc:Q9M384]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.