Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P20280_001 | Banana | nucleus | 88.71 | 87.3 |
| Solyc10g017640.1.1 | Tomato | nucleus | 79.03 | 80.33 |
| KRH48297 | Soybean | nucleus | 85.48 | 59.55 |
| GSMUA_Achr11P... | Banana | nucleus | 87.1 | 35.29 |
| GSMUA_Achr11P... | Banana | nucleus | 82.26 | 31.29 |
| GSMUA_Achr11P... | Banana | nucleus | 67.74 | 29.17 |
| GSMUA_Achr8P12280_001 | Banana | nucleus | 85.48 | 27.46 |
| TraesCS1B01G214500.1 | Wheat | nucleus | 91.94 | 26.15 |
| KRH00625 | Soybean | nucleus | 83.87 | 24.88 |
| TraesCS3B01G470000.1 | Wheat | nucleus | 66.13 | 24.55 |
| TraesCS3B01G469700.1 | Wheat | nucleus | 66.13 | 24.55 |
| KRH40554 | Soybean | nucleus | 82.26 | 24.17 |
| Bra000393.1-P | Field mustard | nucleus | 82.26 | 23.94 |
| CDY60689 | Canola | nucleus | 82.26 | 23.94 |
| CDY53886 | Canola | nucleus | 82.26 | 23.94 |
| CDY37054 | Canola | nucleus | 82.26 | 23.94 |
| CDY27368 | Canola | nucleus | 82.26 | 23.94 |
| Bra039324.1-P | Field mustard | nucleus | 82.26 | 23.94 |
| TraesCS4B01G346700.1 | Wheat | nucleus | 85.48 | 23.87 |
| AT2G45660.1 | Thale cress | nucleus | 82.26 | 23.83 |
| TraesCS4B01G351500.1 | Wheat | nucleus | 62.9 | 23.78 |
| CDY69077 | Canola | nucleus | 80.65 | 23.47 |
| CDX74755 | Canola | nucleus | 80.65 | 23.47 |
| Bra004928.1-P | Field mustard | nucleus | 80.65 | 23.47 |
| PGSC0003DMT400026576 | Potato | nucleus | 80.65 | 23.36 |
| PGSC0003DMT400000028 | Potato | nucleus | 80.65 | 22.32 |
| KRH65189 | Soybean | nucleus | 80.65 | 21.1 |
| TraesCS7B01G158900.1 | Wheat | nucleus | 70.97 | 20.28 |
| TraesCS6B01G017900.1 | Wheat | nucleus | 75.81 | 18.22 |
| KRH48299 | Soybean | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1B01G214600 | EnsemblPlants:TraesCS1B01G214600.1 | TIGR:cd00265 |
Description
No Description!
Coordinates
chr1B:+:389552532..389552720
Molecular Weight (calculated)
7110.7 Da
IEP (calculated)
11.236
GRAVY (calculated)
-0.358
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD VEVALAVFSP RGRLYEFSST TR
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS SSIPKTVERY QKRIQDLGSN HKRNDNSQQS KDETYGLARK
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKVTCS FFINLVQMYW SGTNHISHN
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKVTCS FFINLVQMYW SGTNHISHN
Arabidopsis Description
AGL14Agamous-like MADS-box protein AGL14 [Source:UniProtKB/Swiss-Prot;Acc:Q38838]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.