Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P20280_001 | Banana | nucleus | 27.98 | 85.71 |
| TraesCS1B01G214600.1 | Wheat | nucleus | 27.46 | 85.48 |
| GSMUA_Achr11P... | Banana | nucleus | 47.67 | 60.13 |
| GSMUA_Achr11P... | Banana | nucleus | 43.01 | 57.64 |
| GSMUA_Achr11P... | Banana | nucleus | 47.67 | 56.44 |
| GSMUA_Achr2P11820_001 | Banana | nucleus | 40.41 | 56.12 |
| GSMUA_Achr5P10250_001 | Banana | nucleus | 55.96 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 40.93 | 49.69 |
| GSMUA_Achr10P... | Banana | nucleus | 51.81 | 49.51 |
| GSMUA_Achr11P... | Banana | nucleus | 52.85 | 49.04 |
| GSMUA_Achr1P03630_001 | Banana | nucleus | 53.37 | 48.82 |
| GSMUA_Achr1P24070_001 | Banana | nucleus | 53.37 | 48.58 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 51.81 | 46.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.83 | 46.46 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 24.87 | 38.1 |
| GSMUA_Achr11P... | Banana | nucleus | 27.46 | 33.33 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr8G12280_001 | EnsemblPlants:GSMUA_Achr8P12280_001 |
| EnsemblPlants:GSMUA_Achr8T12280_001 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M0TPT1 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000295E117 | SEG:seg | : |
Description
MADS-box transcription factor 50 [Source:GMGC_GENE;Acc:GSMUA_Achr8G12280_001]
Coordinates
chr8:+:9018889..9025726
Molecular Weight (calculated)
21915.3 Da
IEP (calculated)
9.573
GRAVY (calculated)
-0.731
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTEMKR IENATSRQVT FSKRRSGLLK KAYELSVLCD VEVALIIFSS RGKLYEFSSS SMQSTLERYR EYSREDTSST IMEEDTEQWK HEAACMSKKI
101: EHLEASKQKL LGENLEKKGK SATQYHLLKE QISQLKEKES SLVKENALLS EKCKRLPQLP SAASKGVPPF GTLGQHTEVE TELRIGFPGR GTH
101: EHLEASKQKL LGENLEKKGK SATQYHLLKE QISQLKEKES SLVKENALLS EKCKRLPQLP SAASKGVPPF GTLGQHTEVE TELRIGFPGR GTH
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.