Factsheet for GSMUA_Achr1P24070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20280_001	Banana	nucleus	24.06	80.95
TraesCS7D01G037000.1	Wheat	cytosol	18.4	63.93
GSMUA_Achr10P...	Banana	nucleus	54.72	57.43
GSMUA_Achr11P...	Banana	nucleus	55.66	56.73
GSMUA_Achr2P11820_001	Banana	nucleus	36.79	56.12
GSMUA_Achr11P...	Banana	nucleus	40.09	55.56
GSMUA_Achr11P...	Banana	nucleus	37.74	55.56
GSMUA_Achr2P04340_001	Banana	nucleus	55.66	55.4
GSMUA_Achr8P12280_001	Banana	nucleus	48.58	53.37
GSMUA_Achr1P03630_001	Banana	nucleus	52.36	52.61
GSMUA_Achr11P...	Banana	nucleus	39.62	51.53
GSMUA_Achr5P10250_001	Banana	nucleus	52.36	51.39
GSMUA_AchrUn_...	Banana	nucleus	23.11	49.49
GSMUA_Achr11P...	Banana	nucleus	29.25	38.99
GSMUA_Achr8P09250_001	Banana	nucleus	22.64	38.1
GSMUA_Achr11P...	Banana	nucleus	25.94	34.59

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr1G24070_001
EnsemblPlants:GSMUA_Achr1P24070_001	EnsemblPlants:GSMUA_Achr1T24070_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0S2L4
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000294EEDF	SEG:seg	:	:

Description

MADS-box transcription factor 50 [Source:GMGC_GENE;Acc:GSMUA_Achr1G24070_001]

Coordinates

chr1:-:18492777..18502841

Molecular Weight (calculated)

24178.1 Da

IEP (calculated)

7.418

GRAVY (calculated)

-0.572

Length

212 amino acids

Sequence
(BLAST)

001: MVRGKTQIRR IENAASRQVT FSKRRSGLLK KAYELSVLCD AEVALIVFSS RGKLYEFASS SVQMTIERYM MHTKDAGISK KATEQSTQLK FEATSMTERI
101: KFLEDQKRKL LGEDLVSCSV EELNELELQL ETSLNSIKQT RRRLLLEKIA RLNEEETELL KENALLRQQV KYKSEATPKQ TAIQEADLDD HASQEKNMEV
201: DTELLIGMPG SG

Best Arabidopsis Sequence Match ( AT2G45660.1 )
(BLAST)

001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK

Arabidopsis Description

SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.