Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P20280_001 | Banana | nucleus | 25.0 | 85.71 |
| Solyc10g017640.1.1 | Tomato | nucleus | 22.69 | 80.33 |
| GSMUA_Achr1P03630_001 | Banana | nucleus | 77.31 | 79.15 |
| KRH48297 | Soybean | nucleus | 32.41 | 78.65 |
| GSMUA_Achr2P11820_001 | Banana | nucleus | 48.15 | 74.82 |
| GSMUA_Achr11P... | Banana | nucleus | 43.52 | 61.44 |
| GSMUA_Achr11P... | Banana | nucleus | 40.28 | 60.42 |
| GSMUA_Achr11P... | Banana | nucleus | 43.06 | 57.06 |
| GSMUA_Achr8P12280_001 | Banana | nucleus | 50.0 | 55.96 |
| CDY37054 | Canola | nucleus | 54.63 | 55.4 |
| Bra039324.1-P | Field mustard | nucleus | 54.63 | 55.4 |
| GSMUA_Achr11P... | Banana | nucleus | 53.24 | 55.29 |
| CDY27368 | Canola | nucleus | 54.17 | 54.93 |
| CDY69077 | Canola | nucleus | 53.7 | 54.46 |
| Bra004928.1-P | Field mustard | nucleus | 53.7 | 54.46 |
| CDX74755 | Canola | nucleus | 53.7 | 54.46 |
| AT2G45660.1 | Thale cress | nucleus | 53.7 | 54.21 |
| Bra000393.1-P | Field mustard | nucleus | 53.24 | 53.99 |
| GSMUA_Achr2P04340_001 | Banana | nucleus | 53.24 | 53.99 |
| CDY53886 | Canola | nucleus | 52.78 | 53.52 |
| GSMUA_Achr10P... | Banana | nucleus | 50.0 | 53.47 |
| CDY60689 | Canola | nucleus | 52.31 | 53.05 |
| GSMUA_Achr1P24070_001 | Banana | nucleus | 51.39 | 52.36 |
| PGSC0003DMT400000028 | Potato | nucleus | 53.7 | 51.79 |
| PGSC0003DMT400026576 | Potato | nucleus | 50.93 | 51.4 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.37 | 44.44 |
| GSMUA_Achr11P... | Banana | nucleus | 31.48 | 42.77 |
| KRH48299 | Soybean | nucleus | 22.22 | 35.04 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 20.37 | 34.92 |
| GSMUA_Achr11P... | Banana | nucleus | 24.54 | 33.33 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr5G10250_001 |
| EnsemblPlants:GSMUA_Achr5P10250_001 | EnsemblPlants:GSMUA_Achr5T10250_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0SXA4 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002963698 | SEG:seg | : | : |
Description
MADS-box transcription factor 50 [Source:GMGC_GENE;Acc:GSMUA_Achr5G10250_001]
Coordinates
chr5:-:7309082..7316634
Molecular Weight (calculated)
24470.3 Da
IEP (calculated)
6.522
GRAVY (calculated)
-0.609
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEIALIIFSA RGKLYEFASS SMQEIIERYK AHAKESTSSS AIDHENQPSR YEAASLLKKI
101: EHLETFKRKI LGENLESCSI EELHELESKL EHGLRRIRGK KQQLLEEQLA QLQQKENTLV EENTLLREKL QPNLPSEAAN EVVLDDIPGE HTEVDVETEL
201: CIGCPGRGKT NGILQG
101: EHLETFKRKI LGENLESCSI EELHELESKL EHGLRRIRGK KQQLLEEQLA QLQQKENTLV EENTLLREKL QPNLPSEAAN EVVLDDIPGE HTEVDVETEL
201: CIGCPGRGKT NGILQG
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.