CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G214600.1	Wheat	nucleus	59.55	85.48
Zm00001d047355_P001	Maize	nucleus	62.92	74.67
TraesCS7D01G037000.1	Wheat	cytosol	46.07	67.21
Zm00001d042315_P001	Maize	nucleus	47.19	60.0
Zm00001d031625_P001	Maize	nucleus	42.7	47.5
GSMUA_Achr2P11820_001	Banana	nucleus	71.91	46.04
HORVU6Hr1G002270.1	Barley	mitochondrion, nucleus	53.93	44.86
HORVU1Hr1G051660.10	Barley	nucleus	71.91	41.56
HORVU3Hr1G095080.3	Barley	plastid	51.69	39.66
HORVU4Hr1G085450.1	Barley	nucleus	41.57	38.14
TraesCS3A01G434700.1	Wheat	nucleus	42.7	37.25
KRH00625	Soybean	nucleus	86.52	36.84
KRH40554	Soybean	nucleus	85.39	36.02
KRH65189	Soybean	nucleus	93.26	35.02
HORVU4Hr1G085370.1	Barley	nucleus	39.33	32.41
GSMUA_Achr5P10250_001	Banana	nucleus	78.65	32.41
HORVU7Hr1G054390.1	Barley	nucleus	53.93	31.17
GSMUA_Achr1P03630_001	Banana	nucleus	73.03	30.81
HORVU3Hr1G095240.2	Barley	nucleus	53.93	30.19
Os03t0122600-01	Rice	nucleus	76.4	29.57
TraesCS5A01G515500.1	Wheat	nucleus	73.03	29.55
TraesCS3A01G434400.1	Wheat	nucleus	55.06	29.34
TraesCS4B01G346700.1	Wheat	nucleus	73.03	29.28
TraesCS4D01G341700.1	Wheat	nucleus	73.03	29.28
TraesCS3D01G428000.1	Wheat	nucleus	51.69	28.93
TraesCS3D01G427700.1	Wheat	mitochondrion, nucleus	53.93	28.92
TraesCS1B01G214500.1	Wheat	nucleus	70.79	28.9
Zm00001d048474_P001	Maize	nucleus	75.28	28.88
OQU93352	Sorghum	nucleus	75.28	28.76
HORVU3Hr1G095200.4	Barley	nucleus	53.93	28.74
TraesCS3D01G427900.1	Wheat	nucleus	53.93	28.74
Zm00001d027425_P001	Maize	nucleus	73.03	28.51
KXG39016	Sorghum	nucleus	71.91	28.32
TraesCS1A01G199600.2	Wheat	nucleus	73.03	28.26
TraesCS1D01G203300.2	Wheat	nucleus	73.03	28.26
TraesCS3B01G469700.1	Wheat	nucleus	52.81	28.14
KRH03997	Soybean	nucleus	69.66	27.8
KRH57267	Soybean	nucleus	70.79	27.75
TraesCS3A01G434900.1	Wheat	nucleus	51.69	27.54
TraesCS3A01G435000.1	Wheat	nucleus	51.69	27.54
TraesCS3B01G470000.1	Wheat	nucleus	51.69	27.54
Os01t0922800-01	Rice	nucleus	50.56	27.44
TraesCS4B01G351500.1	Wheat	nucleus	50.56	27.44
TraesCS1D01G203400.1	Wheat	nucleus	70.79	27.27
Os08t0531900-01	Rice	nucleus	55.06	26.78
KRH35396	Soybean	nucleus	64.04	26.64
Os10t0536100-01	Rice	nucleus	69.66	26.61
Zm00001d039913_P002	Maize	nucleus	51.69	26.44
EES01980	Sorghum	nucleus	48.31	26.38
OQU86329	Sorghum	nucleus	50.56	26.32
TraesCS1A01G199900.1	Wheat	nucleus	67.42	26.32
KRG91427	Soybean	nucleus	60.67	25.23
HORVU7Hr1G054320.2	Barley	nucleus	53.93	24.74
TraesCS3A01G432900.1	Wheat	mitochondrion, nucleus	46.07	24.7
HORVU6Hr1G002330.14	Barley	nucleus	52.81	24.48
TraesCS7A01G260900.1	Wheat	nucleus	53.93	23.41
Os06t0108500-01	Rice	nucleus	55.06	23.0
TraesCS5A01G520200.1	Wheat	nucleus, plastid	51.69	22.77
TraesCS4D01G346300.1	Wheat	nucleus	52.81	22.71
TraesCS7B01G158900.1	Wheat	nucleus	53.93	22.12
TraesCS7D01G261900.1	Wheat	nucleus	53.93	21.92
TraesCS6A01G011700.1	Wheat	nucleus	64.04	21.76
TraesCS6B01G017900.1	Wheat	nucleus	62.92	21.71
TraesCS6D01G014600.1	Wheat	nucleus	62.92	21.62
KXG25532	Sorghum	nucleus, plastid	52.81	18.73
HORVU3Hr1G095090.1	Barley	cytosol, mitochondrion, nucleus	51.69	13.65
KRH48299	Soybean	nucleus	0.0	0.0
Zm00001d047356_P002	Maize	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A0R0J702	EMBL:ACUP02004220	EnsemblPlantsGene:GLYMA_07G0809002	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR036879	EnsemblPlants:KRH48297	ProteinID:KRH48297	ProteinID:KRH48297.1	ProteinID:KRH48298.1
InterPro:MADS_MEF2-like	PFAM:PF00319	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PANTHER:PTHR11945
PANTHER:PTHR11945:SF341	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0006ED7EDA

Description

hypothetical protein

Coordinates

chr7:+:7381339..7394948

Molecular Weight (calculated)

10395.6 Da

IEP (calculated)

11.130

GRAVY (calculated)

-0.646

Length

89 amino acids

Sequence
(BLAST)

1: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS SMQESIERYR RHTKHVNPTT FRSVEQNMQ

Best Arabidopsis Sequence Match ( AT2G45660.2 )
(BLAST)

001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK

Arabidopsis Description

SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.