Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57267 | Soybean | nucleus | 91.48 | 89.87 |
| CDY10829 | Canola | nucleus | 24.66 | 79.71 |
| CDY41268 | Canola | nucleus | 24.66 | 79.71 |
| KRH48297 | Soybean | nucleus | 27.8 | 69.66 |
| CDY68007 | Canola | nucleus | 42.15 | 62.67 |
| Bra029424.1-P | Field mustard | nucleus | 46.19 | 59.54 |
| Bra020826.1-P | Field mustard | nucleus | 38.56 | 58.9 |
| VIT_02s0025g04650.t01 | Wine grape | nucleus | 56.05 | 58.41 |
| CDY13289 | Canola | nucleus | 56.5 | 58.06 |
| AT4G11880.1 | Thale cress | nucleus | 56.95 | 57.47 |
| KRH00625 | Soybean | nucleus | 53.36 | 56.94 |
| AT4G22950.1 | Thale cress | nucleus | 55.61 | 56.62 |
| CDX86738 | Canola | nucleus | 55.16 | 55.91 |
| KRH40554 | Soybean | nucleus | 52.47 | 55.45 |
| Bra019343.1-P | Field mustard | nucleus | 54.26 | 55.25 |
| CDX98780 | Canola | nucleus | 53.81 | 54.79 |
| CDY55821 | Canola | nucleus | 52.47 | 52.94 |
| CDX76346 | Canola | nucleus | 52.47 | 52.94 |
| KRG91427 | Soybean | nucleus | 45.74 | 47.66 |
| KRH35396 | Soybean | nucleus | 45.29 | 47.2 |
| KRH65189 | Soybean | nucleus | 49.78 | 46.84 |
| KRH48299 | Soybean | nucleus | 24.66 | 40.15 |
Protein Annotations
| EntrezGene:100782713 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A0R0FC28 | EMBL:ACUP02010372 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_17G132700 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| EnsemblPlants:KRH03997 | ProteinID:KRH03997 | ProteinID:KRH03997.1 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0006EDCE6C |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr17:+:10684402..10692738
Molecular Weight (calculated)
26367.8 Da
IEP (calculated)
10.122
GRAVY (calculated)
-0.931
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTQMKR IENETSRQVT FSKRRNGLLK KAFELSVLCE AEVALIIFST RGRLYEFSSS RCSSVNKTVE RYQRKIKDLG VSNKGIHENT RHLKEGDMSM
101: AKKIEHLEDS RRKLLGDELD KCSIDELQQL ENQLERSLDK IRARKNQLFR ERIENLKQEE KCLLEVNKRL REQYRIDRQR CLTDNVTEKE AEEVETELFI
201: GRPERRMPLK LKSATHSAHK YIA
101: AKKIEHLEDS RRKLLGDELD KCSIDELQQL ENQLERSLDK IRARKNQLFR ERIENLKQEE KCLLEVNKRL REQYRIDRQR CLTDNVTEKE AEEVETELFI
201: GRPERRMPLK LKSATHSAHK YIA
001: MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS SSIPKTVERY QKRIQDLGSN HKRNDNSQQS KDETYGLARK
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKVTCS FFINLVQMYW SGTNHISHN
101: IEHLEISTRK MMGEGLDASS IEELQQLENQ LDRSLMKIRA KKYQLLREET EKLKEKVTCS FFINLVQMYW SGTNHISHN
Arabidopsis Description
AGL14Agamous-like MADS-box protein AGL14 [Source:UniProtKB/Swiss-Prot;Acc:Q38838]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.