CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG93698
KRG94975
KRH00625
KRH01380
KRH03173
KRH03997
KRH07467
KRH18339
KRH18664
KRH21150
KRH23802
KRH39494
KRH39983
KRH40554
KRH42047
KRH42930
KRH45097
KRH45412
KRH48304
KRH52935
KRH56774
KRH57267
KRH59043
KRH62216
KRH65189
KRH65193
KRH70974
KRH74451

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37940.1	KRH07467	AT1G69120.1	15805477
AT4G37940.1	KRH45412	AT1G69120.1	15805477
AT4G37940.1	KRH70974	AT1G69120.1	15805477
AT4G37940.1	KRH23802	AT1G71692.1	15805477
AT4G37940.1	KRH39983	AT1G71692.1	15805477
AT4G37940.1	KRG89812	AT2G41090.1	17360592
AT4G37940.1	KRG94975	AT2G41090.1	17360592
AT4G37940.1	KRH18664	AT2G41090.1	17360592
AT4G37940.1	KRH48304	AT2G45650.1	15805477
AT4G37940.1	KRH65193	AT2G45650.1	15805477
AT4G37940.1	KRH00625	AT2G45660.1	15805477
AT4G37940.1	KRH40554	AT2G45660.1	15805477
AT4G37940.1	KRH65189	AT2G45660.1	15805477
AT4G37940.1	KRG93698	AT3G02310.1	15805477
AT4G37940.1	KRH01380	AT3G02310.1	15805477
AT4G37940.1	KRH18339	AT3G02310.1	15805477
AT4G37940.1	KRH45097	AT3G02310.1	15805477
AT4G37940.1	KRH42047	AT3G57230.1	15805477
AT4G37940.1	KRH48304	AT3G61120.1	15805477
AT4G37940.1	KRH65193	AT3G61120.1	15805477
AT4G37940.1	KRH21150	AT4G18960.1	15805477
AT4G37940.1	KRH42930	AT4G18960.1	15805477
AT4G37940.1	KRH59043	AT4G18960.1	15805477
AT4G37940.1	KRH03997	AT4G22950.1	15805477
AT4G37940.1	KRH57267	AT4G22950.1	15805477
AT4G37940.1	KRH52935	AT4G24540.1	15805477
AT4G37940.1	KRH62216	AT4G24540.1	15805477
AT4G37940.1	KRH39494	AT4G37940.1	15805477
AT4G37940.1	KRH74451	AT4G37940.1	15805477
AT4G37940.1	KRG89812	AT5G21274.1	17360592
AT4G37940.1	KRG94975	AT5G21274.1	17360592
AT4G37940.1	KRH18664	AT5G21274.1	17360592
AT4G37940.1	KRH03173	AT5G60910.1	15805477
AT4G37940.1	KRH56774	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39494	Soybean	nucleus	95.95	96.38
KRH64836	Soybean	nucleus	18.02	66.67
VIT_00s0211g00180.t01	Wine grape	nucleus	66.67	66.07
KRH75125	Soybean	nucleus	16.67	60.66
KRH16883	Soybean	nucleus	64.86	60.25
Solyc02g091550.1.1	Tomato	nucleus	63.51	60.0
Bra011797.1-P	Field mustard	nucleus	60.36	58.77
CDX69345	Canola	nucleus	59.91	58.59
CDX75686	Canola	nucleus	60.36	58.52
CDX90394	Canola	nucleus	60.36	58.52
KRH72490	Soybean	nucleus	63.96	58.44
Bra010623.1-P	Field mustard	nucleus	56.31	58.41
CDY25613	Canola	nucleus	59.46	57.89
AT4G37940.1	Thale cress	nucleus	59.01	57.46
AT2G22630.2	Thale cress	nucleus	58.11	56.83
Bra030222.1-P	Field mustard	nucleus	58.11	56.83
Bra039921.1-P	Field mustard	nucleus	58.11	56.83
CDX89496	Canola	nucleus	57.66	55.9
KRH10635	Soybean	nucleus	62.61	55.82
KRH42051	Soybean	nucleus	55.41	55.66
KRH11093	Soybean	nucleus	18.02	53.33
KRH42047	Soybean	nucleus	51.35	47.3
KRH21716	Soybean	nucleus	38.29	44.5
KRH14461	Soybean	nucleus	20.72	44.23
KRG97386	Soybean	nucleus	28.38	43.75
KRH40560	Soybean	nucleus	27.48	39.35
KRH56460	Soybean	nucleus	35.59	35.59
KRH21150	Soybean	nucleus	37.39	34.16
KRH35403	Soybean	nucleus	34.68	33.19
KRG91419	Soybean	nucleus	34.23	33.04
KRH45412	Soybean	nucleus	34.68	32.63
KRH07467	Soybean	nucleus	34.68	32.63
KRH42930	Soybean	nucleus	35.59	32.51
KRH09173	Soybean	nucleus	34.23	32.2
KRH70973	Soybean	nucleus	35.14	31.97
KRH58800	Soybean	nucleus	34.68	31.56
KRH42695	Soybean	nucleus	34.68	31.56
KRH38649	Soybean	nucleus	34.68	31.56
KRH18339	Soybean	nucleus	35.14	31.33
KRG93698	Soybean	nucleus	35.14	31.33
KRH75123	Soybean	nucleus	34.68	31.3
KRH59043	Soybean	nucleus	34.23	31.28
KRH48304	Soybean	nucleus	34.23	31.02
KRH54740	Soybean	nucleus	33.78	30.74
KRH63171	Soybean	nucleus	33.78	30.74
KRH65193	Soybean	nucleus	33.78	30.61
KRH03173	Soybean	nucleus	32.88	30.54
KRH31527	Soybean	nucleus	33.33	30.45
KRH70974	Soybean	nucleus	33.33	30.45
KRH45097	Soybean	nucleus	34.23	30.28
KRH45099	Soybean	nucleus	33.78	30.24
KRH00622	Soybean	nucleus	32.43	30.13
KRG98899	Soybean	nucleus	33.33	30.08
KRH73684	Soybean	nucleus	33.33	30.08
KRH56775	Soybean	nucleus	32.88	30.04
KRH03170	Soybean	nucleus	32.88	30.04
KRH46066	Soybean	nucleus	33.33	29.96
KRG93701	Soybean	nucleus	32.88	29.92
KRH56774	Soybean	nucleus	32.43	29.51
KRH01380	Soybean	nucleus	33.78	29.41
KRH01382	Soybean	nucleus	32.88	28.85
KRH18331	Soybean	nucleus	30.63	27.87
KRH64830	Soybean	nucleus	18.47	25.47
KRH11095	Soybean	nucleus	18.47	24.55
KRH66116	Soybean	nucleus, plastid	3.15	8.86

Protein Annotations

EntrezGene:100795778	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02000029	EMBL:ACUP02000030	ncoils:Coil
EnsemblPlantsGene:GLYMA_01G020500	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
UniProt:K7K1C4	EnsemblPlants:KRH74451	ProteinID:KRH74451	ProteinID:KRH74451.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945
PANTHER:PTHR11945:SF263	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI0002336DB3	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:2039275..2056055

Molecular Weight (calculated)

25596.8 Da

IEP (calculated)

8.311

GRAVY (calculated)

-0.667

Length

222 amino acids

Sequence
(BLAST)

001: MGRGKIVIER IDNSTSRQVT FSKRRKGLIK KAKELAILCD AQVGLVIFSS TGKLYEYAST SMKSIIERYN TCKEEHHRQM NPESEVKFWQ REAEILRQQL
101: QNLQENHRQL MGEQLYGLSV RNLQDLENQL ELNLQGVRMK KEQILKDEIQ ELNRKGNLIF QENVELYKKV FGTTDMATTS RNAFVPLSYG MHAAGGNPQE
201: LVQLQLCQPE QEVCETSDTA TK

Best Arabidopsis Sequence Match ( AT2G22630.1 )
(BLAST)

001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS

Arabidopsis Description

AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.