Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039921.1-P | Field mustard | nucleus | 85.46 | 85.46 |
| CDY25613 | Canola | nucleus | 83.26 | 82.89 |
| Bra030222.1-P | Field mustard | nucleus | 82.38 | 82.38 |
| CDX89496 | Canola | nucleus | 80.62 | 79.91 |
| AT4G37940.1 | Thale cress | nucleus | 74.01 | 73.68 |
| VIT_00s0211g00180.t01 | Wine grape | nucleus | 62.11 | 62.95 |
| Solyc02g091550.1.1 | Tomato | nucleus | 62.11 | 60.0 |
| KRH39494 | Soybean | nucleus | 56.83 | 58.37 |
| KRH74451 | Soybean | nucleus | 56.83 | 58.11 |
| AT3G57230.1 | Thale cress | nucleus | 57.27 | 54.17 |
| AT2G14210.2 | Thale cress | nucleus | 51.98 | 50.21 |
| AT2G45650.1 | Thale cress | nucleus | 34.8 | 31.35 |
| AT4G18960.1 | Thale cress | nucleus | 34.36 | 30.95 |
| AT1G24260.2 | Thale cress | nucleus | 33.04 | 29.88 |
| AT3G02310.1 | Thale cress | nucleus | 32.6 | 29.6 |
| AT3G61120.1 | Thale cress | nucleus | 31.72 | 29.51 |
| AT2G42830.2 | Thale cress | nucleus | 32.16 | 29.44 |
| AT1G26310.1 | Thale cress | nucleus | 31.28 | 27.84 |
| AT5G60910.1 | Thale cress | nucleus | 29.52 | 27.69 |
| AT5G15800.2 | Thale cress | nucleus | 31.72 | 27.48 |
| AT1G69120.1 | Thale cress | nucleus | 30.4 | 26.95 |
| AT2G03710.1 | Thale cress | nucleus | 30.4 | 26.74 |
| AT3G58780.4 | Thale cress | nucleus | 32.16 | 25.98 |
| AT3G30260.1 | Thale cress | nucleus | 28.19 | 25.7 |
| AT4G09960.4 | Thale cress | nucleus | 35.24 | 24.32 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:816794 | UniProt:A0A178W215 | ProteinID:AAD15571.1 | EMBL:AB493558 |
| ProteinID:AEC07331.1 | Symbol:AGL17 | ProteinID:ANM62286.1 | ArrayExpress:AT2G22630 | EnsemblPlantsGene:AT2G22630 | RefSeq:AT2G22630 |
| TAIR:AT2G22630 | RefSeq:AT2G22630-TAIR-G | EnsemblPlants:AT2G22630.2 | UniProt:C0SV55 | ncoils:Coil | GO:GO:0000003 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048578 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_001324454.1 | RefSeq:NP_179848.1 |
| ProteinID:OAP11731.1 | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | UniProt:Q38840 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EMBL:U20186 | UniParc:UPI0000125685 | : |
Description
AGL17AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215]
Coordinates
chr2:+:9618207..9622163
Molecular Weight (calculated)
26315.4 Da
IEP (calculated)
9.310
GRAVY (calculated)
-0.739
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIQK IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVCLIIFSN TDKLYDFASS SVKSTIERFN TAKMEEQELM NPASEVKFWQ REAETLRQEL
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
101: HSLQENYRQL TGVELNGLSV KELQNIESQL EMSLRGIRMK REQILTNEIK ELTRKRNLVH HENLELSRKV QRIHQENVEL YKKAYGTSNT NGLGHHELVD
201: AVYESHAQVR LQLSQPEQSH YKTSSNS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.