Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010623.1-P | Field mustard | nucleus | 86.4 | 92.06 |
| Bra011797.1-P | Field mustard | nucleus | 91.23 | 91.23 |
| CDX75686 | Canola | nucleus | 91.23 | 90.83 |
| CDX90394 | Canola | nucleus | 91.23 | 90.83 |
| CDX69345 | Canola | nucleus | 90.35 | 90.75 |
| AT2G22630.2 | Thale cress | nucleus | 73.68 | 74.01 |
| VIT_00s0211g00180.t01 | Wine grape | nucleus | 64.91 | 66.07 |
| Solyc02g091550.1.1 | Tomato | nucleus | 63.16 | 61.28 |
| KRH74451 | Soybean | nucleus | 57.46 | 59.01 |
| KRH39494 | Soybean | nucleus | 57.02 | 58.82 |
| AT3G57230.1 | Thale cress | nucleus | 60.09 | 57.08 |
| AT2G14210.2 | Thale cress | nucleus | 53.51 | 51.91 |
| AT4G18960.1 | Thale cress | nucleus | 34.65 | 31.35 |
| AT2G45650.1 | Thale cress | nucleus | 34.21 | 30.95 |
| AT1G24260.2 | Thale cress | nucleus | 33.33 | 30.28 |
| AT5G60910.1 | Thale cress | nucleus | 32.02 | 30.17 |
| AT3G02310.1 | Thale cress | nucleus | 32.89 | 30.0 |
| AT1G26310.1 | Thale cress | nucleus | 32.89 | 29.41 |
| AT1G69120.1 | Thale cress | nucleus | 32.89 | 29.3 |
| AT3G61120.1 | Thale cress | nucleus | 31.14 | 29.1 |
| AT2G03710.1 | Thale cress | nucleus | 32.89 | 29.07 |
| AT2G42830.2 | Thale cress | nucleus | 31.58 | 29.03 |
| AT5G15800.2 | Thale cress | nucleus | 33.33 | 29.01 |
| AT3G30260.1 | Thale cress | nucleus | 30.7 | 28.11 |
| AT3G58780.4 | Thale cress | nucleus | 32.02 | 25.98 |
| AT4G09960.4 | Thale cress | nucleus | 35.96 | 24.92 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:829950 | ProteinID:AEE86856.1 | EMBL:AF336979 | Symbol:AGL21 |
| ProteinID:ANM67034.1 | ArrayExpress:AT4G37940 | EnsemblPlantsGene:AT4G37940 | RefSeq:AT4G37940 | TAIR:AT4G37940 | RefSeq:AT4G37940-TAIR-G |
| EnsemblPlants:AT4G37940.1 | TAIR:AT4G37940.1 | EMBL:BT024846 | ProteinID:CAB37534.1 | ProteinID:CAB80459.1 | ncoils:Coil |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008134 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | RefSeq:NP_001328889.1 | RefSeq:NP_195507.1 | ProteinID:OAO98196.1 | PFAM:PF00319 | PFAM:PF01486 |
| PO:PO:0000016 | PO:PO:0000026 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001185 |
| PO:PO:0003021 | PO:PO:0005059 | PO:PO:0006081 | PO:PO:0006307 | PO:PO:0009005 | PO:PO:0020124 |
| PO:PO:0025281 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF263 | UniProt:Q29PR0 | UniProt:Q9SZJ6 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000016DE | : | : | : |
Description
AGL21Agamous-like MADS-box protein AGL21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ6]
Coordinates
chr4:-:17835217..17838969
Molecular Weight (calculated)
26412.5 Da
IEP (calculated)
9.341
GRAVY (calculated)
-0.749
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIVIQR IDDSTSRQVT FSKRRKGLIK KAKELAILCD AEVGLIIFSS TGKLYDFASS SMKSVIDRYN KSKIEQQQLL NPASEVKFWQ REAAVLRQEL
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
101: HALQENHRQM MGEQLNGLSV NELNSLENQI EISLRGIRMR KEQLLTQEIQ ELSQKRNLIH QENLDLSRKV QRIHQENVEL YKKAYMANTN GFTHREVAVA
201: DDESHTQIRL QLSQPEHSDY DTPPRANE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.