Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78909 | Canola | nucleus | 94.44 | 94.44 |
| Bra013364.1-P | Field mustard | nucleus | 94.44 | 94.44 |
| CDY09267 | Canola | nucleus | 92.46 | 93.57 |
| Bra012564.1-P | Field mustard | nucleus | 92.06 | 92.43 |
| CDX98597 | Canola | nucleus | 91.67 | 92.03 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 70.24 | 78.32 |
| CDX99406 | Canola | nucleus | 94.05 | 75.96 |
| KRH21150 | Soybean | nucleus | 68.65 | 71.19 |
| Solyc02g071730.2.1 | Tomato | nucleus | 68.25 | 69.35 |
| PGSC0003DMT400073134 | Potato | nucleus | 68.25 | 69.35 |
| GSMUA_Achr10P... | Banana | nucleus | 59.92 | 65.94 |
| KRH42930 | Soybean | nucleus | 63.1 | 65.43 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 45.24 | 65.14 |
| KRH59043 | Soybean | nucleus | 62.3 | 64.61 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 59.52 | 59.06 |
| AT2G42830.2 | Thale cress | nucleus | 57.54 | 58.47 |
| EES00105 | Sorghum | nucleus | 61.51 | 57.62 |
| Zm00001d039434_P001 | Maize | nucleus | 59.52 | 57.25 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 61.51 | 56.57 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 60.32 | 56.09 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 60.71 | 56.04 |
| Os01t0201700-02 | Rice | nucleus | 59.92 | 54.71 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 58.33 | 54.65 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 57.94 | 54.28 |
| AT3G58780.4 | Thale cress | nucleus | 60.32 | 54.09 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 53.57 | 54.0 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 57.54 | 53.9 |
| Zm00001d042591_P002 | Maize | nucleus | 57.14 | 53.73 |
| Os01t0886200-01 | Rice | nucleus | 55.95 | 53.21 |
| EES01878 | Sorghum | nucleus | 58.33 | 53.07 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 53.57 | 52.94 |
| Os05t0203800-02 | Rice | nucleus | 56.75 | 52.57 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 52.38 | 52.38 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 52.38 | 52.38 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 52.38 | 52.38 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 51.98 | 51.57 |
| Os12t0207000-01 | Rice | nucleus | 54.37 | 50.74 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 61.11 | 49.68 |
| Zm00001d023955_P003 | Maize | nucleus | 51.59 | 49.06 |
| OQU77603 | Sorghum | nucleus | 56.75 | 48.97 |
| GSMUA_Achr10P... | Banana | nucleus | 61.9 | 48.9 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 53.17 | 48.73 |
| EES15827 | Sorghum | nucleus | 51.19 | 47.96 |
| Zm00001d037737_P001 | Maize | nucleus | 55.95 | 46.08 |
| Zm00001d041781_P001 | Maize | nucleus | 51.59 | 45.3 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 58.33 | 45.09 |
| AT4G09960.4 | Thale cress | nucleus | 56.75 | 43.47 |
| Zm00001d008882_P001 | Maize | nucleus | 56.35 | 43.16 |
| AT2G45650.1 | Thale cress | nucleus | 36.51 | 36.51 |
| AT1G24260.2 | Thale cress | nucleus | 35.32 | 35.46 |
| AT5G60910.1 | Thale cress | nucleus | 33.73 | 35.12 |
| AT2G14210.2 | Thale cress | nucleus | 32.54 | 34.89 |
| AT3G02310.1 | Thale cress | nucleus | 34.52 | 34.8 |
| AT4G37940.1 | Thale cress | nucleus | 31.35 | 34.65 |
| AT3G57230.1 | Thale cress | nucleus | 32.94 | 34.58 |
| AT3G61120.1 | Thale cress | nucleus | 33.33 | 34.43 |
| AT2G22630.2 | Thale cress | nucleus | 30.95 | 34.36 |
| AT5G15800.2 | Thale cress | nucleus | 34.52 | 33.21 |
| AT2G03710.1 | Thale cress | nucleus | 33.33 | 32.56 |
| AT1G26310.1 | Thale cress | nucleus | 32.14 | 31.76 |
| AT1G69120.1 | Thale cress | nucleus | 31.75 | 31.25 |
| AT3G30260.1 | Thale cress | nucleus | 29.37 | 29.72 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:827631 | Symbol:AG | ArrayExpress:AT4G18960 | EnsemblPlantsGene:AT4G18960 |
| RefSeq:AT4G18960 | TAIR:AT4G18960 | RefSeq:AT4G18960-TAIR-G | EnsemblPlants:AT4G18960.1 | TAIR:AT4G18960.1 | Unigene:At.28088 |
| ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0004703 | PO:PO:0004705 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020003 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0000147EC2 | SEG:seg | : |
Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
Coordinates
chr4:+:10382856..10388539
Molecular Weight (calculated)
28694.9 Da
IEP (calculated)
9.914
GRAVY (calculated)
-0.841
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.