Factsheet for Solyc02g071730.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g093960.2.1
Solyc01g106170.2.1
Solyc02g071730.2.1
Solyc02g089200.2.1
Solyc02g091550.1.1
Solyc03g114830.2.1
Solyc04g076280.2.1
Solyc05g015750.2.1
Solyc06g069430.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	Solyc05g015750.2.1	AT1G24260.2	9418042
AT4G18960.1	Solyc01g093960.2.1	AT2G45650.1	9418042
AT4G18960.1	Solyc02g089200.2.1	AT3G02310.1	15604664
AT4G18960.1	Solyc02g089200.2.1	AT3G02310.1	15805477
AT4G18960.1	Solyc02g089200.2.1	AT3G02310.1	9418042
AT4G18960.1	Solyc01g106170.2.1	AT3G57230.1	15805477
AT4G18960.1	Solyc01g093960.2.1	AT3G61120.1	15805477
AT4G18960.1	Solyc02g071730.2.1	AT4G18960.1	14555696
AT4G18960.1	Solyc04g076280.2.1	AT4G24540.1	15805477
AT4G18960.1	Solyc02g091550.1.1	AT4G37940.1	15805477
AT4G18960.1	Solyc03g114830.2.1	AT5G60910.1	15805477
AT4G18960.1	Solyc06g069430.2.1	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073134	Potato	nucleus	95.56	95.56
VIT_10s0003g02070.t01	Wine grape	nucleus	72.18	79.2
KRH21150	Soybean	nucleus	73.39	74.9
KRH42930	Soybean	nucleus	68.55	69.96
CDY09267	Canola	nucleus	69.76	69.48
GSMUA_Achr10P...	Banana	nucleus	63.71	69.0
GSMUA_Achr5P06590_001	Banana	nucleus	48.39	68.57
KRH59043	Soybean	nucleus	66.94	68.31
Bra013364.1-P	Field mustard	nucleus	69.35	68.25
CDX78909	Canola	nucleus	69.35	68.25
AT4G18960.1	Thale cress	nucleus	69.35	68.25
Bra012564.1-P	Field mustard	nucleus	67.34	66.53
CDX98597	Canola	nucleus	67.34	66.53
GSMUA_Achr6P14760_001	Banana	nucleus	62.5	61.02
Solyc07g055920.2.1	Tomato	nucleus	64.92	60.3
Solyc11g028020.1.1	Tomato	nucleus	51.21	56.95
TraesCS3D01G140200.2	Wheat	nucleus	62.9	56.93
Zm00001d039434_P001	Maize	nucleus	60.08	56.87
HORVU3Hr1G026650.1	Barley	nucleus	62.1	56.83
EES00105	Sorghum	nucleus	61.29	56.51
Os01t0201700-02	Rice	nucleus	61.69	55.43
TraesCS3A01G314300.1	Wheat	nucleus	60.89	55.31
CDX99406	Canola	nucleus	68.95	54.81
TraesCS1B01G144800.1	Wheat	nucleus	59.27	54.65
TraesCS1D01G127700.1	Wheat	nucleus	59.27	54.65
TraesCS1A01G125800.1	Wheat	nucleus	58.87	54.28
Os05t0203800-02	Rice	nucleus	58.06	52.94
TraesCS1D01G262700.1	Wheat	nucleus	53.23	52.8
TraesCS1B01G273300.1	Wheat	nucleus	53.23	51.76
Os01t0886200-01	Rice	nucleus	54.84	51.32
TraesCS5B01G115100.1	Wheat	nucleus	52.02	51.19
Zm00001d042591_P002	Maize	nucleus	55.24	51.12
HORVU1Hr1G023620.1	Barley	nucleus	51.61	50.79
TraesCS5D01G118200.1	Wheat	nucleus	51.61	50.79
EES01878	Sorghum	nucleus	56.05	50.18
GSMUA_Achr10P...	Banana	nucleus	64.52	50.16
TraesCS5A01G117500.1	Wheat	nucleus	51.21	50.0
TraesCS3B01G157500.4	Wheat	nucleus	62.5	50.0
Zm00001d023955_P003	Maize	nucleus	52.82	49.43
Os12t0207000-01	Rice	nucleus	52.82	48.52
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	53.23	48.0
EES15827	Sorghum	nucleus	52.02	47.96
Zm00001d041781_P001	Maize	nucleus	54.03	46.69
OQU77603	Sorghum	nucleus	54.84	46.58
HORVU1Hr1G029220.1	Barley	nucleus	60.89	46.32
Zm00001d037737_P001	Maize	nucleus	54.44	44.12
Zm00001d008882_P001	Maize	nucleus	56.45	42.55
Solyc03g019710.2.1	Tomato	nucleus	30.24	42.37
Solyc06g064840.2.1	Tomato	nucleus	33.47	41.29
Solyc04g005320.2.1	Tomato	nucleus	35.08	36.55
Solyc02g091550.1.1	Tomato	nucleus	34.27	36.17
Solyc01g093960.2.1	Tomato	nucleus	35.89	35.32
Solyc05g015750.2.1	Tomato	nucleus	34.27	35.27
Solyc01g106170.2.1	Tomato	mitochondrion	20.97	35.14
Solyc05g012020.2.1	Tomato	nucleus	34.27	35.12
Solyc03g114840.2.1	Tomato	nucleus	34.27	34.55
Solyc02g065730.1.1	Tomato	nucleus	31.85	33.76
Solyc06g069430.2.1	Tomato	nucleus	33.06	33.47
Solyc12g038510.1.1	Tomato	nucleus	33.47	33.2
Solyc05g056620.1.1	Tomato	nucleus	32.66	33.2
Solyc02g089200.2.1	Tomato	nucleus	32.26	32.52
Solyc02g089210.2.1	Tomato	nucleus	31.85	31.6
Solyc03g114830.2.1	Tomato	nucleus	31.05	31.17
Solyc12g088090.1.1	Tomato	nucleus	20.56	22.97
Solyc04g076700.2.1	Tomato	nucleus	12.1	22.73

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	EMBL:L26295	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF187
UniProt:Q40168	SMART:SM00432	SUPFAM:SSF55455	EnsemblPlantsGene:Solyc02g071730.2	EnsemblPlants:Solyc02g071730.2.1	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000012570F	:	:	:

Description

AG1Floral homeotic protein AGAMOUS [Source:UniProtKB/Swiss-Prot;Acc:Q40168]

Coordinates

chr2:-:41094016..41099470

Molecular Weight (calculated)

28725.3 Da

IEP (calculated)

9.966

GRAVY (calculated)

-0.908

Length

248 amino acids

Sequence
(BLAST)

001: MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LVVFSNRGRL YEYANNSVKA TIERYKKACS DSSNTGSVSE
101: ANAQYYQQEA SKLRAQIGNL MNQNRNMMGE ALAGMKLKEL KNLEQRIEKG ISKIRSKKNE LLFAEIEYMQ KREVDLHNNN QYLRAKIAET ERAQHQHQQM
201: NLMPGSSSNY HELVPPPQQF DTRNYLQVNG LQTNNHYPRQ DQPPIQLV

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.