Factsheet for GSMUA_Achr5P06590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P00750_001
GSMUA_Achr2P10250_001
GSMUA_Achr2P13650_001
GSMUA_Achr3P02280_001
GSMUA_Achr3P06800_001
GSMUA_Achr3P07310_001
GSMUA_Achr3P25280_001
GSMUA_Achr3P30440_001
GSMUA_Achr4P23540_001
GSMUA_Achr4P30120_001
GSMUA_Achr5P06590_001
GSMUA_Achr5P24560_001
GSMUA_Achr6P00050_001
GSMUA_Achr6P14760_001
GSMUA_Achr7P00460_001
GSMUA_Achr7P12610_001
GSMUA_Achr8P04330_001
GSMUA_Achr9P01370_001
GSMUA_Achr9P15180_001
GSMUA_Achr9P15540_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	GSMUA_Achr9P01370_001	AT1G24260.2	9418042
AT4G18960.1	GSMUA_Achr1P00750_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr2P10250_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr4P30120_001	AT2G45650.1	9418042
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	15604664
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	15805477
AT4G18960.1	GSMUA_Achr11P...	AT3G02310.1	9418042
AT4G18960.1	GSMUA_Achr3P07310_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr5P24560_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr7P12610_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr9P15540_001	AT3G57230.1	15805477
AT4G18960.1	GSMUA_Achr1P00750_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr2P10250_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr4P30120_001	AT3G61120.1	15805477
AT4G18960.1	GSMUA_Achr10P...	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr10P...	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr5P06590_001	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr6P14760_001	AT4G18960.1	14555696
AT4G18960.1	GSMUA_Achr10P...	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr3P06800_001	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr9P15180_001	AT4G24540.1	15805477
AT4G18960.1	GSMUA_Achr10P...	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr2P13650_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P02280_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P25280_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr3P30440_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr4P23540_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr6P00050_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr7P00460_001	AT5G60910.1	15805477
AT4G18960.1	GSMUA_Achr8P04330_001	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14461	Soybean	nucleus	41.14	69.23
GSMUA_Achr10P...	Banana	nucleus	73.71	56.33
GSMUA_Achr10P...	Banana	nucleus	36.0	53.39
VIT_10s0003g02070.t01	Wine grape	nucleus	66.86	51.77
PGSC0003DMT400073134	Potato	nucleus	69.14	48.79
GSMUA_Achr6P14760_001	Banana	nucleus	70.29	48.43
Solyc02g071730.2.1	Tomato	nucleus	68.57	48.39
KRH21150	Soybean	nucleus	65.71	47.33
GSMUA_Achr10P...	Banana	nucleus	62.86	47.01
KRH42930	Soybean	nucleus	63.43	45.68
CDY09267	Canola	nucleus	64.57	45.38
KRH59043	Soybean	nucleus	62.86	45.27
AT4G18960.1	Thale cress	nucleus	65.14	45.24
GSMUA_Achr7P23690_001	Banana	nucleus	61.71	45.19
Bra012564.1-P	Field mustard	nucleus	64.0	44.62
CDX98597	Canola	nucleus	64.0	44.62
Bra013364.1-P	Field mustard	nucleus	64.0	44.44
CDX78909	Canola	nucleus	64.0	44.44
Bra007419.1-P	Field mustard	nucleus	61.14	43.67
CDX98330	Canola	nucleus	61.71	43.55
Bra014552.1-P	Field mustard	nucleus	61.71	43.55
Bra004716.1-P	Field mustard	nucleus	60.57	43.44
CDX79857	Canola	nucleus	60.57	43.44
KRH73684	Soybean	nucleus	60.57	43.09
AT2G42830.2	Thale cress	nucleus	60.57	42.74
PGSC0003DMT400044552	Potato	nucleus	61.71	42.52
GSMUA_Achr10P...	Banana	nucleus	76.57	42.01
VIT_12s0142g00360.t01	Wine grape	nucleus	65.71	41.97
KRG98899	Soybean	nucleus	58.29	41.46
KRH46066	Soybean	nucleus	58.29	41.3
Solyc07g055920.2.1	Tomato	nucleus	61.71	40.45
CDY49254	Canola	nucleus	61.14	38.91
TraesCS1D01G262700.1	Wheat	nucleus	55.43	38.8
CDX89005	Canola	nucleus	61.14	38.77
CDY00589	Canola	nucleus	60.57	38.55
Bra003356.1-P	Field mustard	nucleus	60.0	38.46
Zm00001d042591_P002	Maize	nucleus	58.86	38.43
GSMUA_Achr5P16870_001	Banana	nucleus, plastid	62.29	38.38
AT3G58780.4	Thale cress	nucleus	61.14	38.08
TraesCS1B01G273300.1	Wheat	nucleus	55.43	38.04
EES01878	Sorghum	nucleus	58.29	36.82
Os01t0886200-01	Rice	nucleus	54.86	36.23
CDX99406	Canola	nucleus	64.0	35.9
TraesCS1A01G262700.1	Wheat	endoplasmic reticulum	55.43	35.27
GSMUA_Achr4P30120_001	Banana	nucleus	45.71	34.04
GSMUA_Achr3P20280_001	Banana	nucleus	45.71	33.9
GSMUA_Achr2P04350_001	Banana	nucleus	46.29	33.75
GSMUA_Achr3P07310_001	Banana	nucleus	46.86	33.61
GSMUA_Achr7P26700_001	Banana	nucleus	45.14	33.19
GSMUA_Achr7P12610_001	Banana	nucleus	44.0	32.77
GSMUA_Achr4P14460_001	Banana	nucleus	44.57	32.5
GSMUA_Achr9P01370_001	Banana	nucleus	44.57	32.1
GSMUA_Achr11P...	Banana	nucleus	42.86	31.91
GSMUA_Achr9P15540_001	Banana	nucleus	44.57	31.84
GSMUA_Achr1P00750_001	Banana	nucleus	44.0	31.82
GSMUA_Achr2P10250_001	Banana	nucleus	44.0	31.82
GSMUA_Achr1P24060_001	Banana	nucleus	44.0	31.56
GSMUA_Achr2P06250_001	Banana	nucleus	40.57	31.42
GSMUA_Achr3P15930_001	Banana	nucleus	42.86	31.25
GSMUA_Achr3P30440_001	Banana	nucleus	40.57	30.87
GSMUA_Achr8P28100_001	Banana	nucleus	42.29	30.83
CDX67765	Canola	nucleus	60.57	30.46
GSMUA_Achr8P04330_001	Banana	nucleus	42.29	30.2
GSMUA_Achr5P24560_001	Banana	nucleus	40.57	30.08
GSMUA_Achr2P13650_001	Banana	nucleus	41.71	29.67
GSMUA_Achr6P00050_001	Banana	nucleus	40.0	28.93
GSMUA_Achr7P00460_001	Banana	nucleus	41.14	28.8
GSMUA_Achr4P23540_001	Banana	nucleus	39.43	27.82
GSMUA_Achr3P25280_001	Banana	nucleus	41.71	27.44
GSMUA_Achr3P02280_001	Banana	nucleus	40.57	27.0
GSMUA_Achr10P...	Banana	nucleus	43.43	26.67
GSMUA_Achr6P06040_001	Banana	nucleus	22.29	16.53
GSMUA_Achr9P29310_001	Banana	nucleus	12.0	12.8

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0045944
GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr5G06590_001	EnsemblPlants:GSMUA_Achr5P06590_001	EnsemblPlants:GSMUA_Achr5T06590_001	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	UniProt:M0SW88	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF187	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	TMHMM:TMhelix	UniParc:UPI00029531FA

Description

Floral homeotic protein AGAMOUS [Source:GMGC_GENE;Acc:GSMUA_Achr5G06590_001]

Coordinates

chr5:-:4838103..4845573

Molecular Weight (calculated)

20214.7 Da

IEP (calculated)

10.302

GRAVY (calculated)

-0.484

Length

175 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALVVFSS RGRLYEYATS SVKESIERYK KACSDTTNTG FPSEGNAQYY QQEASKLHQQ
101: INNLQSTNRN LMGESLNSMS LRDLKQLETR LEKGINKIRT KKANLFKLCA NLFAIRIMCF YYLHGLFKKM LIPHI

Best Arabidopsis Sequence Match ( AT4G09960.1 )
(BLAST)

001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG

Arabidopsis Description

STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.