Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64836 | Soybean | nucleus | 23.43 | 93.33 |
| GSMUA_Achr10P... | Banana | nucleus | 80.75 | 82.48 |
| VIT_18s0041g01880.t01 | Wine grape | nucleus | 66.11 | 70.85 |
| KRH56460 | Soybean | nucleus | 65.69 | 70.72 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 81.59 | 68.66 |
| Solyc11g028020.1.1 | Tomato | nucleus | 60.67 | 65.02 |
| Bra037895.1-P | Field mustard | nucleus | 61.92 | 64.35 |
| PGSC0003DMT400013248 | Potato | nucleus | 61.51 | 63.36 |
| GSMUA_Achr10P... | Banana | nucleus | 60.67 | 63.32 |
| PGSC0003DMT400065614 | Potato | nucleus | 61.09 | 62.93 |
| Bra000696.1-P | Field mustard | nucleus | 59.83 | 61.9 |
| CDX90741 | Canola | nucleus | 59.83 | 61.9 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 45.19 | 61.71 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 63.6 | 59.84 |
| KRH64830 | Soybean | nucleus | 40.17 | 59.63 |
| CDX71922 | Canola | nucleus | 33.47 | 59.26 |
| GSMUA_Achr10P... | Banana | nucleus | 25.1 | 50.85 |
| Solyc06g064840.2.1 | Tomato | nucleus | 40.17 | 47.76 |
| GSMUA_Achr10P... | Banana | nucleus | 63.18 | 47.34 |
| CDY60297 | Canola | nucleus | 56.9 | 46.58 |
| AT4G09960.4 | Thale cress | nucleus | 64.02 | 46.5 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 40.17 | 40.0 |
| CDY71878 | Canola | endoplasmic reticulum | 43.93 | 39.92 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 40.59 | 39.75 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 39.75 | 38.93 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 38.08 | 38.72 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 38.91 | 38.43 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 38.91 | 38.27 |
| GSMUA_Achr11P... | Banana | nucleus | 37.24 | 37.87 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 37.66 | 37.5 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 37.66 | 37.19 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 37.66 | 36.73 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 36.82 | 36.67 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 35.98 | 36.44 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 36.4 | 36.25 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 35.56 | 36.17 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 35.56 | 35.71 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 33.47 | 35.4 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 36.4 | 35.37 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 35.15 | 34.71 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 35.56 | 34.69 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 33.89 | 34.32 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 35.56 | 34.27 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 31.8 | 33.04 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 34.31 | 32.8 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 35.15 | 31.94 |
| GSMUA_Achr10P... | Banana | nucleus | 36.4 | 30.53 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 33.05 | 29.7 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 22.59 | 22.88 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 14.64 | 21.34 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr7G23690_001 |
| EnsemblPlants:GSMUA_Achr7P23690_001 | EnsemblPlants:GSMUA_Achr7T23690_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0TK55 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000296FB64 | SEG:seg | : | : |
Description
MADS-box transcription factor 21 [Source:GMGC_GENE;Acc:GSMUA_Achr7G23690_001]
Coordinates
chr7:-:25786095..25791767
Molecular Weight (calculated)
27693.8 Da
IEP (calculated)
9.318
GRAVY (calculated)
-0.750
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKIEIKR IENNTSRQVT FCKRRNGLLK KAYELSVLCD AEIALIVFSS RGRLYEYSNN SIKSTIERYK KAYANTSNSS CTIDTNSQQY YQQEAAKLRH
101: QIQILQNANK HLMGESLSSL SVKELKQLEN RLERGITRIR SKKHELLFAE IEYMQKREVE LQNDNIYLRA KVAENERAQQ EVIVSTGAEF DALPTYDSRN
201: YYHVNNMLEA ASHYSHHQDQ TALHLGYEMK DSSAAKNMI
101: QIQILQNANK HLMGESLSSL SVKELKQLEN RLERGITRIR SKKHELLFAE IEYMQKREVE LQNDNIYLRA KVAENERAQQ EVIVSTGAEF DALPTYDSRN
201: YYHVNNMLEA ASHYSHHQDQ TALHLGYEMK DSSAAKNMI
001: MMGRGKIEIK RIENSTNRQV TFCKRRNGLL KKAYELSVLC DAEVALIVFS TRGRLYEYAN NNIRSTIERY KKACSDSTNT STVQEINAAY YQQESAKLRQ
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
101: QIQTIQNSNR NLMGDSLSSL SVKELKQVEN RLEKAISRIR SKKHELLLVE IENAQKREIE LDNENIYLRT KVAEVERYQQ HHHQMVSGSE INAIEALASR
201: NYFAHSIMTA GSGSGNGGSY SDPDKKILHL G
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.