Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P30120_001 | Banana | nucleus | 61.89 | 64.26 |
| KRH40560 | Soybean | nucleus | 39.34 | 61.94 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 60.25 | 61.25 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 60.66 | 61.16 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 59.02 | 59.5 |
| GSMUA_Achr11P... | Banana | nucleus | 50.82 | 52.77 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 52.05 | 52.26 |
| KRH00622 | Soybean | nucleus | 50.82 | 51.88 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 46.72 | 47.9 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 45.9 | 46.67 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 42.62 | 46.02 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 45.08 | 45.83 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 45.9 | 45.53 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 45.9 | 45.16 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 44.26 | 44.63 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 43.85 | 44.58 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 31.56 | 44.0 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 43.85 | 42.8 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 45.9 | 42.59 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 41.8 | 41.63 |
| GSMUA_Achr10P... | Banana | nucleus | 20.08 | 41.53 |
| GSMUA_Achr10P... | Banana | nucleus | 48.36 | 41.4 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 38.52 | 40.87 |
| GSMUA_Achr10P... | Banana | nucleus | 38.52 | 40.17 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 38.93 | 39.75 |
| GSMUA_Achr10P... | Banana | nucleus | 36.07 | 38.43 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 25.82 | 38.41 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 35.66 | 36.86 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 39.34 | 36.09 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 36.48 | 35.04 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 33.61 | 33.61 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 31.97 | 33.05 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 31.56 | 32.77 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 38.11 | 32.75 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 31.15 | 31.02 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 29.92 | 30.93 |
| GSMUA_Achr10P... | Banana | nucleus | 37.3 | 28.53 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr1G24060_001 |
| EnsemblPlants:GSMUA_Achr1P24060_001 | EnsemblPlants:GSMUA_Achr1T24060_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0S2L3 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0002969DF2 | SEG:seg | : | : |
Description
MADS-box transcription factor 6 [Source:GMGC_GENE;Acc:GSMUA_Achr1G24060_001]
Coordinates
chr1:-:18482845..18491687
Molecular Weight (calculated)
28120.6 Da
IEP (calculated)
8.820
GRAVY (calculated)
-0.707
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVELKR IENKINRQVT FSKRRSGLLK KAYELSVLCD AEVALIIFSS RGKLFEFGSG EVCKTLERYQ SYRYASQETN VDYHETETQS WYQEFFKLKV
101: KYESLQRSHR HLLGEDLGTL GVKELQQLEK QLDLALSQSR QTKLKLMMEQ IEELQKNERH LEEVNRKLKD KLQVEGSSST AIQRCWESKS MAEGNPLPLH
201: PCPANAAYPE PTLQIGYYQH FGRPEAATTT GAAGENNVMV GWLR
101: KYESLQRSHR HLLGEDLGTL GVKELQQLEK QLDLALSQSR QTKLKLMMEQ IEELQKNERH LEEVNRKLKD KLQVEGSSST AIQRCWESKS MAEGNPLPLH
201: PCPANAAYPE PTLQIGYYQH FGRPEAATTT GAAGENNVMV GWLR
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Arabidopsis Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.