Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P28100_001 | Banana | nucleus | 75.0 | 75.0 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 65.42 | 69.47 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 56.25 | 56.72 |
| GSMUA_Achr11P... | Banana | nucleus | 54.58 | 55.74 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 56.25 | 54.88 |
| GSMUA_Achr9P01370_001 | Banana | nucleus | 55.42 | 54.73 |
| PGSC0003DMT400063315 | Potato | nucleus | 55.83 | 54.47 |
| Solyc03g114840.2.1 | Tomato | nucleus | 55.42 | 54.06 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 52.08 | 52.08 |
| KRH70973 | Soybean | nucleus | 52.92 | 52.05 |
| KRH75123 | Soybean | nucleus | 52.5 | 51.22 |
| CDY04164 | Canola | nucleus | 50.42 | 46.9 |
| Bra025126.1-P | Field mustard | nucleus | 50.0 | 46.69 |
| CDY02978 | Canola | nucleus | 49.58 | 46.48 |
| AT2G03710.1 | Thale cress | nucleus | 49.58 | 46.12 |
| CDY51202 | Canola | nucleus | 49.17 | 45.91 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 44.58 | 45.53 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 45.83 | 45.45 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 45.0 | 44.63 |
| GSMUA_Achr9P29310_001 | Banana | nucleus | 30.0 | 43.9 |
| Bra026543.1-P | Field mustard | nucleus | 49.17 | 43.87 |
| GSMUA_Achr1P24060_001 | Banana | nucleus | 44.58 | 43.85 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 44.58 | 43.5 |
| GSMUA_Achr2P04350_001 | Banana | nucleus | 43.33 | 43.33 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 31.25 | 42.86 |
| GSMUA_Achr10P... | Banana | nucleus | 20.83 | 42.37 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 42.92 | 41.53 |
| Bra017376.1-P | Field mustard | nucleus | 41.67 | 41.15 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 41.67 | 40.0 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 40.0 | 39.67 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 43.33 | 39.54 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 37.08 | 38.7 |
| CDY33113 | Canola | nucleus | 49.58 | 38.51 |
| GSMUA_Achr10P... | Banana | nucleus | 36.25 | 37.18 |
| GSMUA_Achr6P06040_001 | Banana | nucleus | 36.25 | 36.86 |
| GSMUA_Achr7P23690_001 | Banana | nucleus | 36.25 | 36.4 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 37.08 | 36.33 |
| GSMUA_Achr10P... | Banana | nucleus | 42.92 | 36.14 |
| GSMUA_Achr10P... | Banana | nucleus | 33.75 | 35.37 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 37.08 | 33.46 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 33.75 | 33.2 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 32.08 | 32.77 |
| GSMUA_Achr3P20280_001 | Banana | nucleus | 32.08 | 32.63 |
| CDY49686 | Canola | nucleus | 22.92 | 31.79 |
| CDY45709 | Canola | nucleus | 22.92 | 31.79 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 31.25 | 31.78 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 33.33 | 31.5 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 32.08 | 31.43 |
| GSMUA_Achr5P16870_001 | Banana | nucleus, plastid | 37.08 | 31.34 |
| GSMUA_Achr10P... | Banana | nucleus | 33.75 | 25.39 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr3G15930_001 | EnsemblPlants:GSMUA_Achr3P15930_001 |
| EnsemblPlants:GSMUA_Achr3T15930_001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M0SF09 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF274 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00029621D3 | : | : | : | : | : |
Description
MADS-box protein CMB1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G15930_001]
Coordinates
chr3:-:16897184..16914645
Molecular Weight (calculated)
27285.9 Da
IEP (calculated)
8.125
GRAVY (calculated)
-0.473
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVAAIVFSS RGRLFEFCSS SSMLKIIERY RRCSHHASES MVPTNDTPTC YQEYLKLKTH
101: VGYLQHSQKN LLGEDLDTLN IKELDQLDDQ IEMSLRLIRS TKTQVIIDQL TGLKREEQML LESNKTLRRK LQEVDAENSI RLPSQIRASN CIDEPPQPEK
201: FFEPLVCHPS LQIGLSQAST DPSGGGTMSL NVNGFDAAWI
101: VGYLQHSQKN LLGEDLDTLN IKELDQLDDQ IEMSLRLIRS TKTQVIIDQL TGLKREEQML LESNKTLRRK LQEVDAENSI RLPSQIRASN CIDEPPQPEK
201: FFEPLVCHPS LQIGLSQAST DPSGGGTMSL NVNGFDAAWI
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.