Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017376.1-P | Field mustard | nucleus | 91.86 | 97.53 |
| CDY51202 | Canola | nucleus | 88.37 | 88.72 |
| CDY02978 | Canola | nucleus | 87.21 | 87.89 |
| AT2G03710.1 | Thale cress | nucleus | 86.82 | 86.82 |
| CDY33113 | Canola | nucleus | 94.96 | 79.29 |
| CDY49686 | Canola | nucleus | 52.33 | 78.03 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 19.77 | 77.27 |
| CDY45709 | Canola | nucleus | 51.55 | 76.88 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 20.54 | 76.81 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 17.44 | 67.16 |
| CDY72391 | Canola | nucleus | 17.83 | 61.33 |
| VIT_01s0011g00110.t01 | Wine grape | nucleus | 57.36 | 60.91 |
| Solyc04g005320.2.1 | Tomato | nucleus | 53.88 | 58.4 |
| KRH70973 | Soybean | nucleus | 53.88 | 56.97 |
| PGSC0003DMT400072891 | Potato | nucleus | 53.1 | 56.61 |
| Solyc05g012020.2.1 | Tomato | nucleus | 52.71 | 56.2 |
| KRH75123 | Soybean | nucleus | 53.49 | 56.1 |
| CDY26462 | Canola | nucleus | 55.04 | 55.91 |
| CDX78653 | Canola | nucleus | 54.65 | 54.44 |
| CDX70651 | Canola | nucleus | 54.26 | 54.05 |
| GSMUA_Achr8P28100_001 | Banana | nucleus | 50.0 | 53.75 |
| CDX69499 | Canola | nucleus | 54.65 | 53.41 |
| CDY57524 | Canola | nucleus | 51.55 | 53.2 |
| CDX79856 | Canola | nucleus | 18.22 | 52.81 |
| CDY43239 | Canola | nucleus | 50.39 | 52.0 |
| CDY34718 | Canola | nucleus | 50.78 | 51.98 |
| GSMUA_Achr3P15930_001 | Banana | nucleus | 46.9 | 50.42 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 46.12 | 50.0 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 41.86 | 50.0 |
| CDY66153 | Canola | nucleus | 46.9 | 49.39 |
| Zm00001d045231_P002 | Maize | nucleus | 43.02 | 49.33 |
| CDY15724 | Canola | nucleus | 48.06 | 49.21 |
| CDY19977 | Canola | nucleus | 19.38 | 49.02 |
| CDY11824 | Canola | nucleus | 46.51 | 48.98 |
| CDX71922 | Canola | nucleus | 25.58 | 48.89 |
| EER89250 | Sorghum | nucleus | 42.25 | 48.44 |
| GSMUA_Achr2P06250_001 | Banana | nucleus | 42.25 | 48.23 |
| CDY27603 | Canola | nucleus | 47.29 | 48.22 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 42.25 | 48.02 |
| Os06t0162800-01 | Rice | nucleus | 41.86 | 48.0 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 41.86 | 48.0 |
| CDX84935 | Canola | nucleus | 46.51 | 47.81 |
| OQU93000 | Sorghum | nucleus | 44.96 | 47.74 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 41.86 | 47.58 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 44.19 | 47.5 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 41.47 | 47.14 |
| Os03t0215400-01 | Rice | nucleus | 46.12 | 46.3 |
| CDY03905 | Canola | nucleus | 48.45 | 46.3 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 40.7 | 46.26 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 39.92 | 45.37 |
| Zm00001d048082_P001 | Maize | nucleus | 44.19 | 45.24 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 43.41 | 45.16 |
| Zm00001d028217_P001 | Maize | nucleus | 44.57 | 44.57 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 39.53 | 43.97 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 41.86 | 43.72 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 40.31 | 43.15 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 28.29 | 42.94 |
| CDY18911 | Canola | nucleus | 39.15 | 42.62 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 39.53 | 42.15 |
| CDY18912 | Canola | nucleus | 39.15 | 41.91 |
| CDY48451 | Canola | nucleus | 24.81 | 41.83 |
| CDX74754 | Canola | nucleus | 40.31 | 40.62 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 38.76 | 40.49 |
| CDY34564 | Canola | nucleus | 34.11 | 40.37 |
| CDY36077 | Canola | nucleus | 34.11 | 39.82 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 41.86 | 39.13 |
| CDY53885 | Canola | nucleus | 38.37 | 38.52 |
| CDX89097 | Canola | nucleus | 34.11 | 35.77 |
| CDY02185 | Canola | nucleus | 33.33 | 35.68 |
| CDY16832 | Canola | nucleus | 33.33 | 35.68 |
| CDX90741 | Canola | nucleus | 31.78 | 35.5 |
| CDY42841 | Canola | nucleus | 32.95 | 35.42 |
| CDY09267 | Canola | nucleus | 34.11 | 35.34 |
| CDX78909 | Canola | nucleus | 34.5 | 35.32 |
| CDY47002 | Canola | nucleus | 32.95 | 35.27 |
| CDX95960 | Canola | nucleus | 34.88 | 35.16 |
| CDY33554 | Canola | nucleus | 34.88 | 35.16 |
| CDY65811 | Canola | nucleus | 34.88 | 35.16 |
| CDX98597 | Canola | nucleus | 34.11 | 35.06 |
| HORVU4Hr1G067680.14 | Barley | nucleus | 38.37 | 34.86 |
| CDY58690 | Canola | nucleus | 32.56 | 34.85 |
| CDY00082 | Canola | nucleus | 32.95 | 34.27 |
| CDY45899 | Canola | nucleus | 32.95 | 34.14 |
| CDX79857 | Canola | nucleus | 32.17 | 34.02 |
| CDY25613 | Canola | nucleus | 29.07 | 32.89 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 27.91 | 32.88 |
| CDX90394 | Canola | nucleus | 29.07 | 32.75 |
| CDX86353 | Canola | nucleus | 31.4 | 32.53 |
| CDX89496 | Canola | nucleus | 28.68 | 32.31 |
| CDX69345 | Canola | nucleus | 28.29 | 32.16 |
| CDY04265 | Canola | nucleus | 34.5 | 32.13 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 23.26 | 32.09 |
| CDX75686 | Canola | nucleus | 28.29 | 31.88 |
| CDX98330 | Canola | nucleus | 30.62 | 31.85 |
| CDY07357 | Canola | nucleus | 34.5 | 30.8 |
| CDY49254 | Canola | nucleus | 32.56 | 30.55 |
| CDX69036 | Canola | nucleus | 28.29 | 30.42 |
| CDX75412 | Canola | nucleus | 28.29 | 30.42 |
| CDY49287 | Canola | nucleus | 28.29 | 30.42 |
| CDX72465 | Canola | nucleus | 27.52 | 29.58 |
| CDX89005 | Canola | nucleus | 30.62 | 28.62 |
| CDX99406 | Canola | nucleus | 34.5 | 28.53 |
| CDY00589 | Canola | nucleus | 30.23 | 28.36 |
| CDY60297 | Canola | nucleus | 29.46 | 26.03 |
| CDY65347 | Canola | nucleus | 15.12 | 24.68 |
| CDY13236 | Canola | mitochondrion | 18.99 | 24.38 |
| CDY42485 | Canola | nucleus | 34.11 | 23.28 |
| CDX67765 | Canola | nucleus | 31.01 | 22.99 |
| CDY35780 | Canola | nucleus | 17.44 | 22.84 |
| CDX71166 | Canola | nucleus | 29.07 | 21.55 |
| CDX85287 | Canola | nucleus | 15.5 | 21.39 |
| CDY01574 | Canola | nucleus | 10.08 | 21.14 |
| CDY71878 | Canola | endoplasmic reticulum | 19.77 | 19.39 |
| CDY65346 | Canola | cytosol | 0.78 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078EUA6 | EnsemblPlants:CDY04164 | ProteinID:CDY04164 | ProteinID:CDY04164.1 |
| ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00117846001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF352 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE2B0B | SEG:seg | : | : |
Description
BnaA09g19420D
Coordinates
chrLK031949:+:744681..746863
Molecular Weight (calculated)
29562.1 Da
IEP (calculated)
9.237
GRAVY (calculated)
-0.735
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMAKTIEK YRKHSYETMD PNQSAKDLQE KYQDYLKLKS
101: RVEILQHSQR HLLGEEIAGM GVNELEQLER QVDASLRQIR STKARFMLDQ LSDLKTKEEM LLETNRDLKR KLEENDATVT QSLWGASSFA EHSQQQQQQQ
201: GMSSYQTNLP TQEVGFFKPL QGNVAWQMSH YNPGVTNASD SATTSQNVIN GFFPGWTV
101: RVEILQHSQR HLLGEEIAGM GVNELEQLER QVDASLRQIR STKARFMLDQ LSDLKTKEEM LLETNRDLKR KLEENDATVT QSLWGASSFA EHSQQQQQQQ
201: GMSSYQTNLP TQEVGFFKPL QGNVAWQMSH YNPGVTNASD SATTSQNVIN GFFPGWTV
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.