Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18912 | Canola | nucleus | 94.94 | 93.36 |
| CDX74754 | Canola | nucleus | 97.89 | 90.62 |
| AT2G45650.1 | Thale cress | nucleus | 89.03 | 83.73 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 23.21 | 82.09 |
| CDY53885 | Canola | nucleus | 85.65 | 78.99 |
| VIT_15s0048g01270.t01 | Wine grape | nucleus | 67.51 | 65.57 |
| KRH48304 | Soybean | nucleus | 65.82 | 63.67 |
| KRH65193 | Soybean | nucleus | 65.4 | 63.27 |
| CDY72391 | Canola | nucleus | 18.99 | 60.0 |
| GSMUA_Achr1P00750_001 | Banana | nucleus | 61.18 | 59.92 |
| GSMUA_Achr4P30120_001 | Banana | nucleus | 58.65 | 59.15 |
| GSMUA_Achr2P10250_001 | Banana | nucleus | 60.34 | 59.09 |
| Solyc01g093960.2.1 | Tomato | nucleus | 60.76 | 57.14 |
| PGSC0003DMT400000383 | Potato | nucleus | 60.34 | 56.08 |
| KXG26975 | Sorghum | nucleus | 54.85 | 55.32 |
| Os02t0682200-01 | Rice | nucleus | 57.81 | 54.8 |
| EES07448 | Sorghum | nucleus | 57.38 | 53.33 |
| Os04t0580700-01 | Rice | nucleus | 56.54 | 52.76 |
| HORVU0Hr1G032300.1 | Barley | nucleus | 58.23 | 51.69 |
| HORVU6Hr1G066140.9 | Barley | nucleus | 58.23 | 51.49 |
| CDX79856 | Canola | nucleus | 18.99 | 50.56 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 54.85 | 50.19 |
| CDY19977 | Canola | nucleus | 21.52 | 50.0 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 56.54 | 49.26 |
| Zm00001d051465_P002 | Maize | nucleus | 57.81 | 46.76 |
| CDX89097 | Canola | nucleus | 48.1 | 46.34 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 56.12 | 45.86 |
| CDX71922 | Canola | nucleus | 24.89 | 43.7 |
| CDY57524 | Canola | nucleus | 45.57 | 43.2 |
| CDY34718 | Canola | nucleus | 45.57 | 42.86 |
| CDY26462 | Canola | nucleus | 45.57 | 42.52 |
| CDY43239 | Canola | nucleus | 44.73 | 42.4 |
| Zm00001d017614_P003 | Maize | nucleus | 48.95 | 41.88 |
| CDY48451 | Canola | nucleus | 27.0 | 41.83 |
| CDY34564 | Canola | nucleus | 38.4 | 41.74 |
| CDY36077 | Canola | nucleus | 38.82 | 41.63 |
| CDY27603 | Canola | nucleus | 44.3 | 41.5 |
| CDX84935 | Canola | nucleus | 43.88 | 41.43 |
| CDY15724 | Canola | nucleus | 43.88 | 41.27 |
| CDY11824 | Canola | nucleus | 42.62 | 41.22 |
| CDX69499 | Canola | nucleus | 45.57 | 40.91 |
| CDY42841 | Canola | nucleus | 41.35 | 40.83 |
| CDY66153 | Canola | nucleus | 42.19 | 40.82 |
| CDX78653 | Canola | nucleus | 44.3 | 40.54 |
| CDX70651 | Canola | nucleus | 44.3 | 40.54 |
| CDY58690 | Canola | nucleus | 40.93 | 40.25 |
| CDY47002 | Canola | nucleus | 40.51 | 39.83 |
| CDY02185 | Canola | nucleus | 40.51 | 39.83 |
| CDY16832 | Canola | nucleus | 40.51 | 39.83 |
| CDY04164 | Canola | nucleus | 42.62 | 39.15 |
| CDY51202 | Canola | nucleus | 41.77 | 38.52 |
| CDY03905 | Canola | nucleus | 43.88 | 38.52 |
| CDY02978 | Canola | nucleus | 40.51 | 37.5 |
| CDY33554 | Canola | nucleus | 39.66 | 36.72 |
| CDX95960 | Canola | nucleus | 39.66 | 36.72 |
| CDY00082 | Canola | nucleus | 38.4 | 36.69 |
| CDY65811 | Canola | nucleus | 39.24 | 36.33 |
| CDX90741 | Canola | nucleus | 35.02 | 35.93 |
| CDY45899 | Canola | nucleus | 36.71 | 34.94 |
| CDY09267 | Canola | nucleus | 36.71 | 34.94 |
| CDX78909 | Canola | nucleus | 36.71 | 34.52 |
| CDX79857 | Canola | nucleus | 35.44 | 34.43 |
| CDX98597 | Canola | nucleus | 35.87 | 33.86 |
| CDY04265 | Canola | nucleus | 39.24 | 33.57 |
| CDX86353 | Canola | nucleus | 35.02 | 33.33 |
| CDY25613 | Canola | nucleus | 31.65 | 32.89 |
| CDX75686 | Canola | nucleus | 31.22 | 32.31 |
| CDX89496 | Canola | nucleus | 31.22 | 32.31 |
| CDY07357 | Canola | nucleus | 39.24 | 32.18 |
| CDX69345 | Canola | nucleus | 30.8 | 32.16 |
| CDX90394 | Canola | nucleus | 30.8 | 31.88 |
| CDX98330 | Canola | nucleus | 33.33 | 31.85 |
| CDX75412 | Canola | nucleus | 32.07 | 31.67 |
| CDY42485 | Canola | nucleus | 50.21 | 31.48 |
| CDY33113 | Canola | nucleus | 40.93 | 31.39 |
| CDX69036 | Canola | nucleus | 31.65 | 31.25 |
| CDY49287 | Canola | nucleus | 31.22 | 30.83 |
| CDX72465 | Canola | nucleus | 31.22 | 30.83 |
| CDY49254 | Canola | nucleus | 35.02 | 30.18 |
| CDX89005 | Canola | nucleus | 33.76 | 28.99 |
| CDY00589 | Canola | nucleus | 33.33 | 28.73 |
| CDY49686 | Canola | nucleus | 20.25 | 27.75 |
| CDX99406 | Canola | nucleus | 36.29 | 27.56 |
| CDY45709 | Canola | nucleus | 19.83 | 27.17 |
| CDY60297 | Canola | nucleus | 32.91 | 26.71 |
| CDY65347 | Canola | nucleus | 16.88 | 25.32 |
| CDX85287 | Canola | nucleus | 18.14 | 22.99 |
| CDX67765 | Canola | nucleus | 33.76 | 22.99 |
| CDY13236 | Canola | mitochondrion | 18.99 | 22.39 |
| CDY35780 | Canola | nucleus | 18.14 | 21.83 |
| CDX71166 | Canola | nucleus | 30.8 | 20.98 |
| CDY01574 | Canola | nucleus | 10.13 | 19.51 |
| CDY71878 | Canola | endoplasmic reticulum | 20.25 | 18.25 |
| CDY65346 | Canola | cytosol | 0.84 | 8.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078G0U2 | UniProt:A0A078G0U2 | EnsemblPlants:CDY18911 | ProteinID:CDY18911 |
| ProteinID:CDY18911.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00006113001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EEAF88 | SEG:seg |
Description
BnaC04g04390DBnaC04g04390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0U2]
Coordinates
chrLK032090:-:307019..309151
Molecular Weight (calculated)
27175.5 Da
IEP (calculated)
9.404
GRAVY (calculated)
-0.634
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSV GVERTIERLN RHNWCQEVAK LKAKYESLVR TNRHLLGEDI
101: GEMGVKQLQA LERQLEAALT ATRQRKTQVM MEEMEDLRKK ERQLGDINKQ LKIKFEAGGH AFKSFQDFWP NSAASMAGDP NNSKFPVQPS HPDSVDCNTE
201: PFLQIGFQQH YYVQGEGSSV PKSNVACETN FVQDWFL
101: GEMGVKQLQA LERQLEAALT ATRQRKTQVM MEEMEDLRKK ERQLGDINKQ LKIKFEAGGH AFKSFQDFWP NSAASMAGDP NNSKFPVQPS HPDSVDCNTE
201: PFLQIGFQQH YYVQGEGSSV PKSNVACETN FVQDWFL
001: MGRGRVEMKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV GIESTIERYN RCYNCSLSNN KPEETTQSWC QEVTKLKSKY
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
101: ESLVRTNRNL LGEDLGEMGV KELQALERQL EAALTATRQR KTQVMMEEME DLRKKERQLG DINKQLKIKF ETEGHAFKTF QDLWANSAAS VAGDPNNSEF
201: PVEPSHPNVL DCNTEPFLQI GFQQHYYVQG EGSSVSKSNV AGETNFVQGW VL
Arabidopsis Description
AGL6AGAMOUS-like protein 6 [Source:UniProtKB/TrEMBL;Acc:Q1PEU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.