Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13746 | Canola | nucleus | 97.03 | 97.03 |
| Bra038511.1-P | Field mustard | nucleus | 97.03 | 95.02 |
| CDX89487 | Canola | nucleus | 90.68 | 90.68 |
| AT2G22540.1 | Thale cress | nucleus | 90.68 | 89.17 |
| CDY25607 | Canola | nucleus | 65.25 | 88.0 |
| Zm00001d044899_P001 | Maize | nucleus | 19.92 | 66.2 |
| GSMUA_Achr10P... | Banana | nucleus | 55.93 | 57.89 |
| Os06t0217300-01 | Rice | nucleus | 52.97 | 56.05 |
| Zm00001d052180_P001 | Maize | nucleus | 52.12 | 55.66 |
| Zm00001d018142_P001 | Maize | nucleus | 52.12 | 55.66 |
| Os02t0761000-01 | Rice | nucleus | 53.39 | 55.26 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 53.39 | 55.02 |
| CDY03445 | Canola | nucleus | 51.27 | 54.75 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 52.54 | 54.39 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 52.54 | 54.39 |
| KXG31156 | Sorghum | nucleus | 52.12 | 53.95 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 52.12 | 53.95 |
| CDY11019 | Canola | nucleus | 49.15 | 53.7 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 51.69 | 53.04 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 50.0 | 52.21 |
| CDX92641 | Canola | nucleus | 49.15 | 50.66 |
| EER88077 | Sorghum | nucleus | 47.46 | 49.78 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 50.0 | 49.17 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 46.19 | 48.23 |
| KXG40019 | Sorghum | nucleus | 47.03 | 47.84 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 46.19 | 47.81 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 48.31 | 47.3 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 46.19 | 46.58 |
| Os03t0186600-01 | Rice | nucleus | 47.88 | 45.56 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 56.36 | 45.24 |
| Zm00001d027957_P001 | Maize | nucleus | 47.88 | 44.66 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 30.51 | 44.17 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 27.54 | 36.11 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 30.93 | 30.42 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078CI69 | EnsemblPlants:CDX76906 | ProteinID:CDX76906 | ProteinID:CDX76906.1 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00127429001 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0004EDC3B9 | : | : | : | : |
Description
BnaC08g34920D
Coordinates
chrLK031808:-:1982996..1986479
Molecular Weight (calculated)
26595.6 Da
IEP (calculated)
6.690
GRAVY (calculated)
-0.672
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMREVLERHN LQSKNLEKLD QPSLELQLVE NSDHALLSKE
101: IAGKSHRLRQ MRGEELQGLS IEELQQLEKA LESGLTRVIE TKSEKIMNEI SYLQRKGMQL MDVNKRLRQQ GTQLTGENER LGQQIFNNVH ERYGGGESEN
201: TAVYEQGHSS ESITNAGNST GAPVDSESSD ISLRLG
101: IAGKSHRLRQ MRGEELQGLS IEELQQLEKA LESGLTRVIE TKSEKIMNEI SYLQRKGMQL MDVNKRLRQQ GTQLTGENER LGQQIFNNVH ERYGGGESEN
201: TAVYEQGHSS ESITNAGNST GAPVDSESSD ISLRLG
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.