Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018142_P001 | Maize | nucleus | 93.42 | 96.38 |
| Zm00001d052180_P001 | Maize | nucleus | 92.98 | 95.93 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 91.23 | 91.23 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 90.79 | 90.79 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 90.79 | 90.79 |
| Os02t0761000-01 | Rice | nucleus | 87.72 | 87.72 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 87.72 | 86.96 |
| EER88077 | Sorghum | nucleus | 70.61 | 71.56 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 18.42 | 66.67 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 17.98 | 66.13 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 17.54 | 65.57 |
| KRH62216 | Soybean | nucleus | 18.86 | 65.15 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 63.16 | 62.88 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 17.54 | 61.54 |
| GSMUA_Achr10P... | Banana | nucleus | 60.53 | 60.53 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 24.56 | 59.57 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 57.02 | 57.27 |
| KRH74496 | Soybean | nucleus | 53.95 | 54.19 |
| KRH69674 | Soybean | nucleus | 53.51 | 53.74 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 20.18 | 53.49 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 17.54 | 53.33 |
| CDY13746 | Canola | nucleus | 54.39 | 52.54 |
| CDX76906 | Canola | nucleus | 53.95 | 52.12 |
| PGSC0003DMT400041773 | Potato | nucleus | 54.39 | 52.1 |
| Bra038511.1-P | Field mustard | nucleus | 54.82 | 51.87 |
| Bra030228.1-P | Field mustard | nucleus | 53.51 | 51.69 |
| AT2G22540.1 | Thale cress | nucleus | 54.39 | 51.67 |
| KXG40019 | Sorghum | nucleus | 52.19 | 51.29 |
| CDX89487 | Canola | nucleus | 53.07 | 51.27 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 38.6 | 48.89 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 62.72 | 48.64 |
| Bra019221.1-P | Field mustard | nucleus | 46.05 | 48.61 |
| CDY11019 | Canola | nucleus | 46.05 | 48.61 |
| PGSC0003DMT400024247 | Potato | nucleus | 50.0 | 48.51 |
| CDY03445 | Canola | nucleus | 46.49 | 47.96 |
| Solyc11g010570.1.1 | Tomato | nucleus | 55.7 | 47.92 |
| AT4G24540.1 | Thale cress | nucleus | 45.18 | 46.82 |
| KRH42097 | Soybean | nucleus | 41.67 | 46.34 |
| KRH52935 | Soybean | nucleus | 46.93 | 45.73 |
| CDX92641 | Canola | nucleus | 45.61 | 45.41 |
| PGSC0003DMT400083739 | Potato | nucleus | 43.86 | 45.25 |
| KRH49819 | Soybean | nucleus | 40.79 | 45.15 |
| KRH10603 | Soybean | nucleus | 38.16 | 41.83 |
| CDY25607 | Canola | nucleus | 31.58 | 41.14 |
| KRH21764 | Soybean | nucleus | 36.84 | 40.78 |
| Solyc04g076280.2.1 | Tomato | vacuole | 34.21 | 40.0 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 30.7 | 38.25 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 51.32 | 36.56 |
| KRH10606 | Soybean | nucleus | 33.77 | 36.49 |
| Solyc01g105800.2.1 | Tomato | nucleus | 42.98 | 35.13 |
| KRH21757 | Soybean | nucleus | 34.21 | 31.45 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A194YSK3 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | EnsemblPlants:KXG31156 | ProteinID:KXG31156 | ProteinID:KXG31156.1 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF171 | SMART:SM00432 | EnsemblPlantsGene:SORBI_3004G306500 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000220729B | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr4:+:64468656..64476040
Molecular Weight (calculated)
25474.0 Da
IEP (calculated)
4.951
GRAVY (calculated)
-0.631
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS SMNEIIDKYN THSKNLGKAE EPSLDLNLEH SKYANLNEQL
101: VEASLRLRQM RGEELEGLSV EELQQLEKNL ETGLHRVLQT KDQQFLEQIS DLERKSTQLA EENMQLRNQV SQIPPAGKQA VADTENVIAE DGQSSESVMT
201: ALHSGSSQDN DDGSDVSLKL GLPCVAWK
101: VEASLRLRQM RGEELEGLSV EELQQLEKNL ETGLHRVLQT KDQQFLEQIS DLERKSTQLA EENMQLRNQV SQIPPAGKQA VADTENVIAE DGQSSESVMT
201: ALHSGSSQDN DDGSDVSLKL GLPCVAWK
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.