Factsheet for Bra019221.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra010623.1-P
Bra011021.1-P
Bra011509.1-P
Bra011797.1-P
Bra012564.1-P
Bra012997.1-P
Bra013364.1-P
Bra017638.1-P
Bra019221.1-P
Bra024480.1-P
Bra029347.1-P
Bra029424.1-P
Bra035952.1-P
Bra038326.1-P
Bra039324.1-P
Bra039913.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24540.1	Bra011021.1-P	AT1G26310.1	11439126
AT4G24540.1	Bra004007.1-P	AT1G69120.1	11439126
AT4G24540.1	Bra004361.1-P	AT1G69120.1	11439126
AT4G24540.1	Bra038326.1-P	AT1G69120.1	11439126
AT4G24540.1	Bra004007.1-P	AT1G69120.1	15805477
AT4G24540.1	Bra004361.1-P	AT1G69120.1	15805477
AT4G24540.1	Bra038326.1-P	AT1G69120.1	15805477
AT4G24540.1	Bra024480.1-P	AT2G18040.1	20129060
AT4G24540.1	Bra039913.1-P	AT2G18040.1	20129060
AT4G24540.1	Bra000392.1-P	AT2G45650.1	15805477
AT4G24540.1	Bra004927.1-P	AT2G45650.1	15805477
AT4G24540.1	Bra000393.1-P	AT2G45660.1	15805477
AT4G24540.1	Bra004928.1-P	AT2G45660.1	15805477
AT4G24540.1	Bra039324.1-P	AT2G45660.1	15805477
AT4G24540.1	Bra011509.1-P	AT3G57230.1	15805477
AT4G24540.1	Bra017638.1-P	AT3G57230.1	15805477
AT4G24540.1	Bra029424.1-P	AT4G11880.1	15805477
AT4G24540.1	Bra012564.1-P	AT4G18960.1	15805477
AT4G24540.1	Bra013364.1-P	AT4G18960.1	15805477
AT4G24540.1	Bra019221.1-P	AT4G24540.1	15805477
AT4G24540.1	Bra010623.1-P	AT4G37940.1	15805477
AT4G24540.1	Bra011797.1-P	AT4G37940.1	15805477
AT4G24540.1	Bra012997.1-P	AT5G60910.1	15805477
AT4G24540.1	Bra029347.1-P	AT5G60910.1	15805477
AT4G24540.1	Bra035952.1-P	AT5G60910.1	15805477
AT4G24540.1	Bra012997.1-P	AT5G60910.1	21798944
AT4G24540.1	Bra029347.1-P	AT5G60910.1	21798944
AT4G24540.1	Bra035952.1-P	AT5G60910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11019	Canola	nucleus	100.0	100.0
AT4G24540.1	Thale cress	nucleus	85.65	84.09
KRH62216	Soybean	nucleus	22.69	74.24
Zm00001d044899_P001	Maize	nucleus	20.83	63.38
Bra030228.1-P	Field mustard	nucleus	56.94	52.12
KRH52935	Soybean	nucleus	54.17	50.0
Bra038511.1-P	Field mustard	nucleus	55.09	49.38
Zm00001d018142_P001	Maize	nucleus	49.54	48.42
GSMUA_Achr3P06800_001	Banana	nucleus	50.93	48.03
PGSC0003DMT400024247	Potato	nucleus	51.85	47.66
Zm00001d052180_P001	Maize	nucleus	48.61	47.51
GSMUA_Achr10P...	Banana	nucleus	49.54	46.93
Os06t0217300-01	Rice	nucleus	47.69	46.19
KXG31156	Sorghum	nucleus	48.61	46.05
Os02t0761000-01	Rice	nucleus	48.61	46.05
EER88077	Sorghum	nucleus	46.3	44.44
TraesCS6A01G313800.1	Wheat	nucleus	46.76	44.3
TraesCS6D01G293200.1	Wheat	nucleus	46.76	44.3
TraesCS6B01G343900.1	Wheat	cytosol	46.76	44.3
TraesCS7D01G176700.1	Wheat	nucleus	46.3	44.25
HORVU6Hr1G077300.8	Barley	nucleus	45.83	43.04
TraesCS7A01G175200.2	Wheat	nucleus	46.76	42.08
TraesCS7B01G080300.2	Wheat	cytosol	45.37	40.66
VIT_18s0001g07460.t01	Wine grape	nucleus	58.8	39.69
TraesCS4D01G301100.1	Wheat	nucleus	41.2	39.38
KXG40019	Sorghum	nucleus	41.2	38.36
HORVU4Hr1G077850.13	Barley	nucleus	41.2	38.03
GSMUA_Achr9P15180_001	Banana	nucleus	51.39	37.76
TraesCS4B01G302600.2	Wheat	nucleus	39.81	37.72
Solyc04g076280.2.1	Tomato	vacuole	33.33	36.92
Os03t0186600-01	Rice	nucleus	40.28	35.08
TraesCS4A01G002600.1	Wheat	nucleus	26.39	34.97
Zm00001d027957_P001	Maize	nucleus	40.74	34.78
Zm00001d027955_P001	Maize	extracellular, golgi	22.69	27.22
HORVU7Hr1G036130.10	Barley	nucleus, plastid	29.17	26.25

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra019221	EnsemblPlants:Bra019221.1	EnsemblPlants:Bra019221.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000060	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006810
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009739	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010077
GO:GO:0010220	GO:GO:0043565	GO:GO:0045893	GO:GO:0045944	GO:GO:0046982	GO:GO:0046983
GO:GO:0048438	GO:GO:0048510	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4DRS8
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF179	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002540FD8	SEG:seg	:	:

Description

AT4G24540 (E=2e-088) AGL24 | AGL24 (AGAMOUS-LIKE 24); protein binding / protein heterodimerization/ protein homodimerization/ sequence-specific DNA binding / transcription factor

Coordinates

chrA03:-:25625200..25627809

Molecular Weight (calculated)

24546.4 Da

IEP (calculated)

9.097

GRAVY (calculated)

-0.630

Length

216 amino acids

Sequence
(BLAST)

001: MAREKRRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMKDILGRYN LHASNINKVM GQPSPYNQVE NCNLSRLSQE
101: VEDKTKQLRK LRGEDLEGLN LEELQRLEKM LESGLSRVSE KKGEFLMSQI SSLEKRGSEL VDENRRLRER VVTMEMAKTM ALKEAVETES ATTNVSSYDS
201: GAPLEDDFSD TSLKLG

Best Arabidopsis Sequence Match ( AT4G24540.1 )
(BLAST)

001: MAREKIRIKK IDNITARQVT FSKRRRGIFK KADELSVLCD ADVALIIFSA TGKLFEFSSS RMRDILGRYS LHASNINKLM DPPSTHLRLE NCNLSRLSKE
101: VEDKTKQLRK LRGEDLDGLN LEELQRLEKL LESGLSRVSE KKGECVMSQI FSLEKRGSEL VDENKRLRDK LETLERAKLT TLKEALETES VTTNVSSYDS
201: GTPLEDDSDT SLKLGLPSWE

Arabidopsis Description

AGL24MADS-box protein AGL24 [Source:UniProtKB/Swiss-Prot;Acc:O82794]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.