Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000393.1-P | |
| Bra004928.1-P | |
| Bra019221.1-P | |
| Bra039324.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G18040.1 | Bra000393.1-P | AT2G45660.1 | 20129060 |
| AT2G18040.1 | Bra004928.1-P | AT2G45660.1 | 20129060 |
| AT2G18040.1 | Bra039324.1-P | AT2G45660.1 | 20129060 |
| AT2G18040.1 | Bra019221.1-P | AT4G24540.1 | 20129060 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 100.0 | 100.0 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 98.32 | 98.32 |
| Bra024480.1-P | Field mustard | mitochondrion | 94.96 | 94.96 |
| AT2G18040.1 | Thale cress | mitochondrion | 93.28 | 93.28 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 77.31 | 77.97 |
| GSMUA_Achr11P... | Banana | nucleus | 76.47 | 77.12 |
| VIT_04s0023g03190.t01 | Wine grape | cytosol | 76.47 | 77.12 |
| Solyc01g110530.2.1 | Tomato | plastid | 74.79 | 75.42 |
| PGSC0003DMT400004094 | Potato | nucleus | 74.79 | 75.42 |
| KRH08096 | Soybean | cytosol | 78.15 | 73.81 |
| KRH69799 | Soybean | cytosol | 77.31 | 73.02 |
| Os04t0663800-01 | Rice | cytosol, nucleus | 42.86 | 70.83 |
| EES11766 | Sorghum | nucleus | 71.43 | 68.55 |
| Zm00001d025062_P001 | Maize | extracellular, mitochondrion, plastid | 70.59 | 67.74 |
| HORVU2Hr1G001350.2 | Barley | nucleus | 68.91 | 67.21 |
| TraesCS2D01G009700.1 | Wheat | cytosol | 68.07 | 66.94 |
| TraesCS2A01G007900.1 | Wheat | cytosol, mitochondrion, nucleus | 68.07 | 66.94 |
| TraesCS2B01G012800.1 | Wheat | cytosol, mitochondrion, nucleus | 68.91 | 66.67 |
| Os04t0118500-01 | Rice | plastid | 68.91 | 66.67 |
| HORVU2Hr1G109660.3 | Barley | cytosol | 25.21 | 65.22 |
| TraesCS2D01G491300.1 | Wheat | mitochondrion | 57.98 | 61.06 |
| HORVU5Hr1G121760.1 | Barley | cytosol | 23.53 | 50.0 |
| HORVU4Hr1G072290.1 | Barley | cytosol | 36.97 | 45.36 |
| HORVU6Hr1G068220.3 | Barley | cytosol | 31.93 | 43.18 |
| OQU82515 | Sorghum | nucleus | 66.39 | 38.16 |
| TraesCS3B01G116600.1 | Wheat | cytosol, mitochondrion, nucleus | 29.41 | 35.35 |
| TraesCS4A01G388100.2 | Wheat | cytosol, mitochondrion, nucleus | 29.41 | 32.71 |
| HORVU3Hr1G096490.2 | Barley | cytosol | 36.97 | 31.43 |
| TraesCS5B01G513900.1 | Wheat | nucleus | 29.41 | 24.14 |
| TraesCS6B01G233500.1 | Wheat | mitochondrion, plastid | 26.89 | 17.58 |
| OQU79160 | Sorghum | cytosol, nucleus, plastid | 34.45 | 16.53 |
Protein Annotations
| MapMan:18.12.4 | Gene3D:3.10.50.40 | EnsemblPlantsGene:Bra039913 | EnsemblPlants:Bra039913.1 | EnsemblPlants:Bra039913.1-P | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR000297 | UniProt:M4FFN9 | PFAM:PF00639 |
| InterPro:PPIase_PpiC | InterPro:PPIase_PpiC_CS | ScanProsite:PS01096 | PFscan:PS50198 | PANTHER:PTHR10657 | PANTHER:PTHR10657:SF4 |
| SUPFAM:SSF54534 | UniParc:UPI0002541187 | : | : | : | : |
Description
AT2G18040 (E=6e-060) PIN1AT | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1); peptidyl-prolyl cis-trans isomerase
Coordinates
chrA07:-:1691377..1692214
Molecular Weight (calculated)
13029.5 Da
IEP (calculated)
9.710
GRAVY (calculated)
-0.578
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRDQVKAS HILIKHQGSR RKASWKDPEG KVIMTTTREA AVEQLKSIRE DILSGKANFE DVAARVSDCS SAKRGGDLGP FGRGQMQKPF EEATYALKVG
101: DISEIVDTDS GVHIIKRTA
101: DISEIVDTDS GVHIIKRTA
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.