Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G116600.1 | Wheat | cytosol, mitochondrion, nucleus | 76.64 | 82.83 |
| HORVU5Hr1G121760.1 | Barley | cytosol | 29.91 | 57.14 |
| HORVU4Hr1G072290.1 | Barley | cytosol | 45.79 | 50.52 |
| TraesCS2A01G007900.1 | Wheat | cytosol, mitochondrion, nucleus | 50.47 | 44.63 |
| Os04t0118500-01 | Rice | plastid | 44.86 | 39.02 |
| Zm00001d025062_P001 | Maize | extracellular, mitochondrion, plastid | 44.86 | 38.71 |
| HORVU3Hr1G096490.2 | Barley | cytosol | 45.79 | 35.0 |
| GSMUA_Achr8P19300_001 | Banana | cytosol | 38.32 | 34.75 |
| GSMUA_Achr11P... | Banana | nucleus | 37.38 | 33.9 |
| PGSC0003DMT400004094 | Potato | nucleus | 35.51 | 32.2 |
| Solyc01g110530.2.1 | Tomato | plastid | 34.58 | 31.36 |
| CDY38175 | Canola | cytosol, mitochondrion, nucleus | 32.71 | 29.41 |
| Bra039913.1-P | Field mustard | cytosol, mitochondrion, nucleus | 32.71 | 29.41 |
| KRH08096 | Soybean | cytosol | 34.58 | 29.37 |
| VIT_04s0023g03190.t01 | Wine grape | cytosol | 31.78 | 28.81 |
| Bra024480.1-P | Field mustard | mitochondrion | 31.78 | 28.57 |
| KRH69799 | Soybean | cytosol | 33.64 | 28.57 |
| CDY20906 | Canola | mitochondrion | 31.78 | 28.57 |
| CDY25130 | Canola | cytosol, mitochondrion, nucleus | 31.78 | 28.57 |
| PGSC0003DMT400051327 | Potato | nucleus | 33.64 | 28.35 |
| Solyc02g062250.2.1 | Tomato | nucleus | 33.64 | 28.35 |
| CDY29218 | Canola | mitochondrion | 30.84 | 27.73 |
| AT2G18040.1 | Thale cress | mitochondrion | 29.91 | 26.89 |
| OQU79160 | Sorghum | cytosol, nucleus, plastid | 28.97 | 12.5 |
| CDX87855 | Canola | nucleus | 30.84 | 8.82 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G388100.2 | EnsemblPlantsGene:TraesCS4A01G388100 | Gene3D:3.10.50.40 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000297 |
| InterPro:PPIase_PpiC | PFscan:PS50198 | SUPFAM:SSF54534 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4A:-:665635051..665636796
Molecular Weight (calculated)
12201.3 Da
IEP (calculated)
7.714
GRAVY (calculated)
-0.778
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MRASHILIRH EESRREASWK DPEGQVISAT TRDDADARLG ELHGQILADY ASFADLAAQH SARPPAAGLH QRADHARQIQ DCLVMDKINP CGQQYWLLRP
101: WARRNQH
101: WARRNQH
001: MASRDQVKAS HILIKHQGSR RKASWKDPEG KIILTTTREA AVEQLKSIRE DIVSGKANFE EVATRVSDCS SAKRGGDLGS FGRGQMQKPF EEATYALKVG
101: DISDIVDTDS GVHIIKRTA
101: DISDIVDTDS GVHIIKRTA
Arabidopsis Description
PIN1Peptidyl-prolyl cis-trans isomerase Pin1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL42]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.